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PLM4_65_b1_redo_sep16_scaffold_1340

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1340_1
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1667)
DNA (1665bp) protein (555aa)
Acetoacetyl-CoA synthetase {ECO:0000313|EMBL:EKE74767.1}; EC=6.2.1.16 {ECO:0000313|EMBL:EKE74767.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Acetoacetyl-CoA synthetase Tax=Oceanibaculum indicum P24 RepID=K2JK04_9PROT
acetoacetyl-CoA synthetase
PLM4_65_b1_redo_sep16_scaffold_1340_2
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1856..2821
DNA (966bp) protein (322aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI00036BBD7A
Membrane protein {ECO:0000313|EMBL:KJB95491.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
integral membrane protein
PLM4_65_b1_redo_sep16_scaffold_1340_3
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2904..3671
DNA (768bp) protein (256aa)
3-hydroxyacyl-CoA dehydrogenase type II Tax=Bradyrhizobium sp. S23321 RepID=I0G074_9BRAD
3-hydroxyacyl-CoA dehydrogenase
3-hydroxyacyl-CoA dehydrogenase type II {ECO:0000313|EMBL:BAL74161.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
PLM4_65_b1_redo_sep16_scaffold_1340_4
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3692..3940
DNA (249bp) protein (83aa)
Putative uncharacterized protein Tax=Burkholderia sp. (strain 383) RepID=Q39D80_BURS3
Uncharacterized protein {ECO:0000313|EMBL:KEA57963.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1340_5
Azospirillum sp. CAG:239, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3954..4484)
DNA (531bp) protein (177aa)
Uncharacterized protein Tax=Azospirillum sp. CAG:239 RepID=R6J5X1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDB53201.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum; environmental samples.;" source="Azospirillum sp. CAG:239.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1340_6
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4530..5078)
DNA (549bp) protein (183aa)
tRNA/rRNA methyltransferase SpoU Tax=Oceanibaculum indicum P24 RepID=K2JUC6_9PROT
tRNA/rRNA methyltransferase (SpoU)
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
PLM4_65_b1_redo_sep16_scaffold_1340_7
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5184..6233
DNA (1050bp) protein (350aa)
Putative L-asparaginase II Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z6J1_AZOL4
Asparaginase {ECO:0000313|EMBL:KJB93832.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
putative L-asparaginase II
PLM4_65_b1_redo_sep16_scaffold_1340_8
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6280..7317
DNA (1038bp) protein (346aa)
Oxidoreductase, zinc-binding dehydrogenase family Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TI99_TISMK
NADPH:quinone oxidoreductase {ECO:0000313|EMBL:EWY39151.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
oxidoreductase, zinc-binding dehydrogenase family
PLM4_65_b1_redo_sep16_scaffold_1340_9
unknown

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7400..7957
DNA (558bp) protein (186aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1340_10
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7963..8583)
DNA (621bp) protein (207aa)
glutathione transferase (EC:2.5.1.18)
Putative Glutathione transferase {ECO:0000313|EMBL:CAL74905.1}; EC=2.5.1.18 {ECO:0000313|EMBL:CAL74905.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
Putative Glutathione transferase Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YLX9_BRASO
PLM4_65_b1_redo_sep16_scaffold_1340_11
unknown

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8701..9153
DNA (453bp) protein (151aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1340_12
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9364..11586
DNA (2223bp) protein (741aa)
Serine/threonine protein kinase (Modular protein) Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T463_META2
serine/threonine protein kinase
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
PLM4_65_b1_redo_sep16_scaffold_1340_13
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11605..13221)
DNA (1617bp) protein (539aa)
hypothetical protein Tax=Hyphomicrobium zavarzinii RepID=UPI00037DCEE0
Bipolar DNA helicase HerA {ECO:0000313|EMBL:CDO59114.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1340_14
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13234..14220)
DNA (987bp) protein (329aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
Signal transduction histidine kinase Tax=Azospirillum amazonense Y2 RepID=G1Y1M9_9PROT
Hybrid sensor histidine kinase
PLM4_65_b1_redo_sep16_scaffold_1340_15
Asticcacaulis sp. YBE204, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14478..15059)
DNA (582bp) protein (194aa)
Uncharacterized protein Tax=Asticcacaulis sp. YBE204 RepID=V4NLK0_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ76896.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. YBE204.;"
PLM4_65_b1_redo_sep16_scaffold_1340_16
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15123..15509)
DNA (387bp) protein (129aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TTF4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KGM34918.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
translation initiation inhibitor
PLM4_65_b1_redo_sep16_scaffold_1340_17
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15594..16601)
DNA (1008bp) protein (336aa)
Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Tax=uncultured nuHF2 cluster bacterium HF0130_29D04 RepID=E7C3C7_9BACT
rieske [2Fe-2S] domain-containing protein 5
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_1340_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16631..17827)
DNA (1197bp) protein (399aa)
ABC-type branched-chain amino acid transport system, periplasmic component Tax=SAR116 cluster alpha proteobacterium HIMB100 RepID=G5ZWH5_9PROT
substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM4_65_b1_redo_sep16_scaffold_1340_19
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17993..18445
DNA (453bp) protein (151aa)
MarR family transcriptional regulator Tax=Rhodanobacter fulvus Jip2 RepID=I4VWK0_9GAMM
MarR family transcriptional regulator {ECO:0000313|EMBL:KGI78463.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
transcriptional regulator
PLM4_65_b1_redo_sep16_scaffold_1340_20
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18470..18922)
DNA (453bp) protein (151aa)
Acyl dehydratase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QIY7_AZOSU
Acyl dehydratase {ECO:0000313|EMBL:KJR62795.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
acyl dehydratase
PLM4_65_b1_redo_sep16_scaffold_1340_21
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18919..21402)
DNA (2484bp) protein (828aa)
ATP-dependent protease, putative Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AUQ2_RUBXD
ATP-dependent protease
Tax=RBG_16_Gamma2_65_34_curated
PLM4_65_b1_redo_sep16_scaffold_1340_22
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21405..21893)
DNA (489bp) protein (163aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2JRX1_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM4_65_b1_redo_sep16_scaffold_1340_23
Capsaspora owczarzaki, Capsaspora, Ichthyosporea, Eukaryota

Not on your lists

22163..22453
DNA (291bp) protein (97aa)
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
Pterin 4 alpha carbinolamine dehydratase Tax=Capsaspora owczarzaki (strain ATCC 30864) RepID=E9BX95_CAPO3
Pterin 4 alpha carbinolamine dehydratase {ECO:0000313|EMBL:KJE89374.1}; species="Eukaryota; Ichthyosporea; Capsaspora.;" source="Capsaspora owczarzaki (strain ATCC 30864).;"
PLM4_65_b1_redo_sep16_scaffold_1340_24
unknown

Not on your lists

22470..22961
DNA (492bp) protein (164aa)
Sel1 domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_1340_25
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23123..24247
DNA (1125bp) protein (375aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Dual-specificity RNA methyltransferase RlmN Tax=Azospirillum brasilense Sp245 RepID=G8AF30_AZOBR
rlmN; ribosomal RNA large subunit methyltransferase N
PLM4_65_b1_redo_sep16_scaffold_1340_26
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24491..25441
DNA (951bp) protein (317aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
gshB; glutathione synthetase (EC:6.3.2.3)
Glutathione synthetase Tax=Oceanibaculum indicum P24 RepID=K2KLR5_9PROT
PLM4_65_b1_redo_sep16_scaffold_1340_27
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25457..26227
DNA (771bp) protein (257aa)
Trans-aconitate 2-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147}; EC=2.1.1.144 {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147};; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
tam; trans-aconitate methyltransferase (EC:2.1.1.144)
Trans-aconitate 2-methyltransferase Tax=alpha proteobacterium BAL199 RepID=A8TT06_9PROT
PLM4_65_b1_redo_sep16_scaffold_1340_28
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26393..26860
DNA (468bp) protein (156aa)
Two component system response regulator Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EQD0_9RHIZ
Two component system response regulator {ECO:0000313|EMBL:CCV06974.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
LuxR family transcriptional regulator
PLM4_65_b1_redo_sep16_scaffold_1340_29
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26904..27260)
DNA (357bp) protein (119aa)
hydratase Tax=Amycolatopsis balhimycina RepID=UPI000365BA30
Uncharacterized protein {ECO:0000313|EMBL:ETW97098.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hydratase/decarboxylase
Displaying 29 items

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