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PLM4_65_b1_redo_sep16_scaffold_1708

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1708_1

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comp(3..1034)
DNA (1032bp) protein (344aa)
hypothetical protein Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0B7E
Marine sediment metagenome DNA, contig: S06H3_S07272 {ECO:0000313|EMBL:GAI27711.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1708_2
unknown

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comp(1205..1450)
DNA (246bp) protein (82aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1708_3
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1889..3127
DNA (1239bp) protein (413aa)
Dioxygenase Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TQ38_TISMK
dioxygenase
Dioxygenase {ECO:0000313|EMBL:AFK54876.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM4_65_b1_redo_sep16_scaffold_1708_4
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3117..3827
DNA (711bp) protein (237aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000255|HAMAP-Rule:MF_00766}; Short=Monofunctional TGase {ECO:0000255|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000255|HAMAP-Rule:MF_00766};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
Monofunctional biosynthetic peptidoglycan transglycosylase Tax=Rhodospirillum rubrum RepID=MTGA_RHORT
monofunctional biosynthetic peptidoglycan transglycosylase
PLM4_65_b1_redo_sep16_scaffold_1708_5
unknown

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comp(3844..4098)
DNA (255bp) protein (85aa)
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1708_6
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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4345..5409
DNA (1065bp) protein (355aa)
Extracellular solute-binding protein, family 1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKT4_TISMK
iron deficiency-induced protein A
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_b1_redo_sep16_scaffold_1708_7
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5604..8747)
DNA (3144bp) protein (1048aa)
hypothetical protein Tax=Amorphus coralli RepID=UPI00036C4DA2
Delta-1-pyrroline-5-carboxylate dehydrogenase 3 {ECO:0000313|EMBL:EAR20403.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_1708_8
unknown

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8845..9306
DNA (462bp) protein (154aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1708_9
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9318..9737)
DNA (420bp) protein (140aa)
Uncharacterized protein Tax=Caenispirillum salinarum AK4 RepID=K9H2Q9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKV31344.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1708_10
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9742..10671)
DNA (930bp) protein (310aa)
Pyruvate carboxyltransferase Tax=Methylobacterium sp. GXF4 RepID=I9CGK9_9RHIZ
Pyruvate carboxyltransferase {ECO:0000313|EMBL:EIZ83162.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
hmgL1; hydroxymethylglutaryl-CoA lyase
PLM4_65_b1_redo_sep16_scaffold_1708_11
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(10668..10877)
DNA (210bp) protein (70aa)
hypothetical protein Tax=Scytonema hofmanni RepID=UPI0003720EE2
Plasmid stabilization system protein {ECO:0000313|EMBL:EGK86851.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vaginatus FGP-2.;"
plasmid stabilization system
PLM4_65_b1_redo_sep16_scaffold_1708_12
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11347..13380)
DNA (2034bp) protein (678aa)
Carbamoyl-phosphate synthase L chain ATP-binding protein Tax=Oceanibaculum indicum P24 RepID=K2JL97_9PROT
3-methylcrotonyl-CoA carboxylase subunit alpha {ECO:0000313|EMBL:KJB93316.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
mccA; 3-methylcrotonyl-CoA carboxylase, biotin-containing subunit alpha
PLM4_65_b1_redo_sep16_scaffold_1708_13
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13401..14339)
DNA (939bp) protein (313aa)
Uncharacterized protein Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z2U7_AZOL4
membrane protein
Membrane protein {ECO:0000313|EMBL:AIB16320.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM4_65_b1_redo_sep16_scaffold_1708_14
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14327..15112)
DNA (786bp) protein (262aa)
Enoyl-CoA hydratase/carnithine racemase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJ18_AZOSU
enoyl-CoA hydratase/carnithine racemase
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:AEV25386.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
PLM4_65_b1_redo_sep16_scaffold_1708_15
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15127..16734)
DNA (1608bp) protein (536aa)
Acetyl/propionyl-CoA carboxylase, beta chain Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z9Y2_AZOL4
methylcrotonoyl-CoA carboxylase
Methylcrotonoyl-CoA carboxylase {ECO:0000313|EMBL:AIB15080.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM4_65_b1_redo_sep16_scaffold_1708_16
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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16927..17793
DNA (867bp) protein (289aa)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase {ECO:0000313|EMBL:EFL52742.1}; EC=5.3.3.10 {ECO:0000313|EMBL:EFL52742.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
5-carboxymethyl-2-hydroxymuconate Delta-isomerase Tax=Desulfovibrio fructosivorans JJ RepID=E1JRX3_DESFR
fumarylacetoacetate hydrolase family protein
PLM4_65_b1_redo_sep16_scaffold_1708_17
Hyphomonas adhaerens, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17823..18812
DNA (990bp) protein (330aa)
hypothetical protein Tax=Hirschia maritima RepID=UPI00037E8D2D
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:KCZ84590.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas adhaerens MHS-3.;"
endonuclease/exonuclease/phosphatase
PLM4_65_b1_redo_sep16_scaffold_1708_18
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18837..20057)
DNA (1221bp) protein (407aa)
MFS permease Tax=Oceanibaculum indicum P24 RepID=K2J3Z2_9PROT
MFS permease {ECO:0000313|EMBL:EKE77696.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Major facilitator superfamily, general substrate transporter
PLM4_65_b1_redo_sep16_scaffold_1708_19
unknown

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comp(20131..20646)
DNA (516bp) protein (172aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1708_20
Pseudomonas taeanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20765..21901)
DNA (1137bp) protein (379aa)
acyl-CoA dehydrogenase Tax=Pseudomonas alcaliphila RepID=UPI00030C9748
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KFX68928.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas taeanensis MS-3.;"
acyl-CoA dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_1708_21
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21909..22412)
DNA (504bp) protein (168aa)
UPI0003CFA4AD related cluster Tax=unknown RepID=UPI0003CFA4AD
Uncharacterized protein {ECO:0000313|EMBL:ESZ87981.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1708_22
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22427..23110)
DNA (684bp) protein (228aa)
Short-chain dehydrogenase/reductase SDR Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KA77_NITWC
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_1708_23
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(23116..24522)
DNA (1407bp) protein (469aa)
TAP domain protein Tax=Roseiflexus sp. (strain RS-1) RepID=A5UQ02_ROSS1
TAP domain-containing protein
TAP domain protein {ECO:0000313|EMBL:ABQ88705.1}; Flags: Precursor;; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
Displaying 23 items

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