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PLM4_65_b1_redo_sep16_scaffold_6021

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_6021_1
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..304)
DNA (303bp) protein (101aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
3-isopropylmalate dehydratase small subunit Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A5S5_STAND
3-isopropylmalate dehydratase small subunit
PLM4_65_b1_redo_sep16_scaffold_6021_2
unknown

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comp(331..828)
DNA (498bp) protein (166aa)
hypothetical protein Tax=Microchaete sp. PCC 7126 RepID=UPI00034A8920
PLM4_65_b1_redo_sep16_scaffold_6021_3
unknown

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comp(882..1376)
DNA (495bp) protein (165aa)
RDD domain containing protein
PLM4_65_b1_redo_sep16_scaffold_6021_4
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1443..2852)
DNA (1410bp) protein (470aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
3-isopropylmalate dehydratase large subunit Tax=Oceanibaculum indicum P24 RepID=K2KHS6_9PROT
leuC; 3-isopropylmalate dehydratase, large subunit
PLM4_65_b1_redo_sep16_scaffold_6021_5
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3033..3458)
DNA (426bp) protein (142aa)
50S ribosomal protein L19 Tax=Magnetospirillum gryphiswaldense RepID=A4TWN5_9PROT
rplS; 50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
PLM4_65_b1_redo_sep16_scaffold_6021_6
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3455..4183)
DNA (729bp) protein (243aa)
trmD; tRNA (Guanine-N(1)-)-methyltransferase (EC:2.1.1.-)
tRNA (guanine-N(1)-)-methyltransferase Tax=alpha proteobacterium BAL199 RepID=A8TYV8_9PROT
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM4_65_b1_redo_sep16_scaffold_6021_7
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

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comp(4180..4974)
DNA (795bp) protein (265aa)
Uncharacterized protein Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FHN4_DESAA
hypothetical protein
Tax=RBG_13_Aminicenantes_63_10_curated
PLM4_65_b1_redo_sep16_scaffold_6021_8
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4946..5554)
DNA (609bp) protein (203aa)
Ribosome maturation factor RimM Tax=Rhodospirillum rubrum RepID=RIMM_RHORT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
16S rRNA processing protein RimM
PLM4_65_b1_redo_sep16_scaffold_6021_9
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5581..5955)
DNA (375bp) protein (125aa)
30S ribosomal protein S16 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SL76_RHOPH
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385, ECO:0000313|EMBL:CCG08741.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
PLM4_65_b1_redo_sep16_scaffold_6021_10
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5981..7387)
DNA (1407bp) protein (469aa)
Signal recognition particle protein Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z325_AZOL4
ffh; GTPase of the signal recognition particle
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
PLM4_65_b1_redo_sep16_scaffold_6021_11
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7591..7848
DNA (258bp) protein (86aa)
Uncharacterized protein Tax=Rhizobium sp. CF080 RepID=J2T4Y0_9RHIZ
Hypothetical protein
Tax=RBG_16_Alphaproteobacteria_64_48_curated
PLM4_65_b1_redo_sep16_scaffold_6021_12
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7961..8179
DNA (219bp) protein (73aa)
Uncharacterized protein Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BIE7_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK59910.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
PLM4_65_b1_redo_sep16_scaffold_6021_13
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8313..9770
DNA (1458bp) protein (486aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
hypothetical protein Tax=Kiloniella laminariae RepID=UPI000369C095
histidine kinase
PLM4_65_b1_redo_sep16_scaffold_6021_14
uncultured Acetothermia bacterium, Acetothermia, Bacteria

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comp(9801..10628)
DNA (828bp) protein (276aa)
Methyltransferase Tax=uncultured candidate division OP1 bacterium RepID=H5SS30_9BACT
Methyltransferase {ECO:0000313|EMBL:BAL55539.1}; species="Bacteria; Acetothermia; environmental samples.;" source="uncultured Acetothermia bacterium.;"
putative methyltransferase type 11
PLM4_65_b1_redo_sep16_scaffold_6021_15
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10632..11435)
DNA (804bp) protein (268aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2KI56_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE76960.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
putative nuclease (SNase domain)
PLM4_65_b1_redo_sep16_scaffold_6021_16
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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11515..12492
DNA (978bp) protein (326aa)
pip; proline iminopeptidase Pip (EC:3.4.11.5)
Proline iminopeptidase Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IPC0_RHOCS
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_65_b1_redo_sep16_scaffold_6021_17
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12642..12770)
DNA (129bp) protein (43aa)
Uncharacterized protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9F715_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN91492.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Displaying 17 items

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