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PLM4_65_b1_redo_sep16_scaffold_2101

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2101_1
Fonsecaea pedrosoi, Fonsecaea, Chaetothyriales, Chaetothyriomycetidae, Ascomycota, Fungi

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comp(108..1457)
DNA (1350bp) protein (450aa)
4-aminobutyrate aminotransferase (EC:2.6.1.19)
hypothetical protein Tax=Nodosilinea nodulosa RepID=UPI0002DE711E
Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence {ECO:0000313|EMBL:KIW84299.1}; species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Chaetothyriomycetidae; Chaetothyriales; Herpotrichiellaceae; Fonsecaea.;" source="Fonsecaea pedrosoi CBS 271.37.;"
PLM4_65_b1_redo_sep16_scaffold_2101_2
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1488..2585)
DNA (1098bp) protein (366aa)
Amino acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine Tax=Rhodospirillum photometricum DSM 122 RepID=H6SR64_RHOPH
Amino-acid transporter subunit membrane component of ABC superfamily {ECO:0000313|EMBL:CDI03621.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
Amino acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine
PLM4_65_b1_redo_sep16_scaffold_2101_3
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2572..3627)
DNA (1056bp) protein (352aa)
Amino acid ABC transporter permease Tax=Thauera RepID=N6XJE8_9RHOO
Amino acid ABC transporter permease {ECO:0000313|EMBL:ENO81801.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
polar amino acid ABC transporter inner membrane subunit
PLM4_65_b1_redo_sep16_scaffold_2101_4
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3740..4762)
DNA (1023bp) protein (341aa)
amino acid ABC transporter substrate-binding protein Tax=Rhizobium leguminosarum RepID=UPI00036BE2A9
cationic amino acid ABC transporter periplasmic binding protein
Cationic amino acid ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:ACA20157.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
PLM4_65_b1_redo_sep16_scaffold_2101_5
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5095..6528)
DNA (1434bp) protein (478aa)
GntR family transcriptional regulator Tax=Amycolatopsis benzoatilytica RepID=UPI00036C0CC6
GntR family transcriptional regulator
Transcriptional regulator, GntR family with aminotransferase domain protein {ECO:0000313|EMBL:ACS64555.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12D).;"
PLM4_65_b1_redo_sep16_scaffold_2101_6
Aneurinibacillus aneurinilyticus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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6664..7305
DNA (642bp) protein (214aa)
hypothetical protein Tax=Streptomyces vitaminophilus RepID=UPI000377C54D
Cupin domain protein {ECO:0000313|EMBL:ERI07392.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneurinibacillus.;" source="Aneurinibacillus aneurinilyticus ATCC 12856.;"
dioxygenase
PLM4_65_b1_redo_sep16_scaffold_2101_7

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7327..7800
DNA (474bp) protein (158aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037FCC9C
Pyridoxamine 5'-phosphate oxidase protein {ECO:0000313|EMBL:KFM14697.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-O18.;"
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
PLM4_65_b1_redo_sep16_scaffold_2101_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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7876..8526
DNA (651bp) protein (217aa)
Putative benzoate-CoA ligase BzlA (Fragment) bin=GWD2_Deltaproteobacteria_55_8 species=Clostridia bacterium enrichment culture clone BF genus=unknown taxon_order=unknown taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
AMP-dependent synthetase and ligase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2101_9
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8647..9408
DNA (762bp) protein (254aa)
hypothetical protein Tax=Rhizobium sp. (strain BR816) RepID=UPI00036CF802
GntR family transcriptional regulator {ECO:0000313|EMBL:KEC78235.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
GntR family transcriptional regulator
PLM4_65_b1_redo_sep16_scaffold_2101_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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9493..10497
DNA (1005bp) protein (335aa)
Tat pathway signal sequence domain protein Tax=Proteobacteria bacterium CAG:139 RepID=R6AA47_9PROT
extracellular solute-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2101_11
Aneurinibacillus aneurinilyticus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10548..11243
DNA (696bp) protein (232aa)
TENA/THI-4 family protein Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1Y0Z8_ANEAE
TENA/THI-4 family protein {ECO:0000313|EMBL:ERI05882.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneurinibacillus.;" source="Aneurinibacillus aneurinilyticus ATCC 12856.;"
aldehyde dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_2101_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11303..12142
DNA (840bp) protein (280aa)
ABC transporter, ATP-binding component Tax=Saccharopolyspora erythraea RepID=A4FI08_SACEN
ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2101_13
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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12108..12941
DNA (834bp) protein (278aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Tax=Rhizobium sp. CF080 RepID=J2TDT8_9RHIZ
putative amino acid ABC transporter, permease protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM4_65_b1_redo_sep16_scaffold_2101_14
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12965..13972
DNA (1008bp) protein (336aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI0002E7E894
Uncharacterized protein {ECO:0000313|EMBL:ERI34389.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
dioxygenase
PLM4_65_b1_redo_sep16_scaffold_2101_15
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(14004..14993)
DNA (990bp) protein (330aa)
Aldo/keto reductase Tax=Paenibacillus mucilaginosus K02 RepID=I0BDK3_9BACL
Aldo/keto reductase {ECO:0000313|EMBL:AKG35894.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus ATCC 35681.;"
aldo/keto reductase
PLM4_65_b1_redo_sep16_scaffold_2101_16
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15049..16053)
DNA (1005bp) protein (335aa)
Dioxygenase Tax=Alcaligenes RepID=M5J3B1_9BURK
Dioxygenase {ECO:0000313|EMBL:KGO99921.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis.;"
dioxygenase
PLM4_65_b1_redo_sep16_scaffold_2101_17
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16046..16957)
DNA (912bp) protein (304aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI00036CC031
esterase/lipase/thioesterase family protein
Esterase/lipase/thioesterase family protein {ECO:0000313|EMBL:AHC48607.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NBRC 15126 = ATCC 27061.;"
PLM4_65_b1_redo_sep16_scaffold_2101_18
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16947..17642)
DNA (696bp) protein (232aa)
GntR family transcriptional regulator Tax=Burkholderia kururiensis RepID=UPI0003479D0A
ygaE; transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AFK53967.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM4_65_b1_redo_sep16_scaffold_2101_19
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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17764..18792
DNA (1029bp) protein (343aa)
Trap dicarboxylate transporter-dctp subunit Tax=Roseibium sp. TrichSKD4 RepID=E2CBQ4_9RHOB
Trap dicarboxylate transporter-dctp subunit {ECO:0000313|EMBL:EFO34141.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
Trap-type C4-dicarboxylate transporter periplasmic component
PLM4_65_b1_redo_sep16_scaffold_2101_20
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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18789..19292
DNA (504bp) protein (168aa)
Tripartite ATP-independent periplasmic Tax=Roseibium sp. TrichSKD4 RepID=E2CBQ3_9RHOB
C4-dicarboxylate ABC transporter substrate-binding protein
Tax=CG_Rhodocyc_01
PLM4_65_b1_redo_sep16_scaffold_2101_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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19289..20581
DNA (1293bp) protein (431aa)
Trap-type c4-dicarboxylate transport system, large permease component Tax=Roseibium sp. TrichSKD4 RepID=E2CBQ2_9RHOB
TRAP C4-dicarboxylate transporter permease
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_2101_22
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20592..21719
DNA (1128bp) protein (376aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI0003004C9A
Uncharacterized protein {ECO:0000313|EMBL:KGD93354.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
monooxygenase
Displaying 22 items

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