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PLM4_65_b1_redo_sep16_scaffold_2912

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2912_1
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(188..1345)
DNA (1158bp) protein (386aa)
Uncharacterized protein Tax=Geobacter sulfurreducens RepID=D7AGI2_GEOSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIE41398.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
PLM4_65_b1_redo_sep16_scaffold_2912_2
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1404..2717)
DNA (1314bp) protein (438aa)
Replication-associated recombination protein A Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z801_AZOL4
ATPase AAA {ECO:0000313|EMBL:KJR66795.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
rarA; Replication-associated recombination protein A
PLM4_65_b1_redo_sep16_scaffold_2912_3
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2714..4123)
DNA (1410bp) protein (470aa)
degP; periplasmic serine protease, Do (EC:3.4.21.-)
Periplasmic serine protease, Do {ECO:0000313|EMBL:ACI97868.1}; EC=3.4.21.- {ECO:0000313|EMBL:ACI97868.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Periplasmic serine protease, Do Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IQY2_RHOCS
PLM4_65_b1_redo_sep16_scaffold_2912_4
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4277..4711)
DNA (435bp) protein (145aa)
50S ribosomal protein L17 Tax=Acidiphilium RepID=RL17_ACICJ
rplQ; 50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
PLM4_65_b1_redo_sep16_scaffold_2912_5
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4796..5818)
DNA (1023bp) protein (341aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
rpoA; DNA-directed RNA polymerase alpha chain (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha Tax=Magnetospirillum gryphiswaldense RepID=A4U4G5_9PROT
PLM4_65_b1_redo_sep16_scaffold_2912_6
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5896..6303)
DNA (408bp) protein (136aa)
30S ribosomal protein S11 Tax=Rhodospirillaceae RepID=RS11_MAGSA
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000255|HAMAP-Rule:MF_01310}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
PLM4_65_b1_redo_sep16_scaffold_2912_7
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6347..6727)
DNA (381bp) protein (127aa)
30S ribosomal protein S13 Tax=Agrobacterium albertimagni AOL15 RepID=K2PXC0_9RHIZ
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315, ECO:0000313|EMBL:CDN53647.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
PLM4_65_b1_redo_sep16_scaffold_2912_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6896..7483)
DNA (588bp) protein (196aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
adenylate kinase Tax=Rhodopseudomonas sp. B29 RepID=UPI000348BE5F
adk; adenylate kinase
PLM4_65_b1_redo_sep16_scaffold_2912_9
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7480..8826)
DNA (1347bp) protein (449aa)
Protein translocase subunit SecY Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRS6_RHOCS
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
secY; preprotein translocase subunit SecY
PLM4_65_b1_redo_sep16_scaffold_2912_10
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8865..9374)
DNA (510bp) protein (170aa)
50S ribosomal protein L15 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RL15_PARL1
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
50S ribosomal protein L15
PLM4_65_b1_redo_sep16_scaffold_2912_11
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9458..9658)
DNA (201bp) protein (67aa)
50S ribosomal protein L30 Tax=Rhodospirillum rubrum RepID=RL30_RHORT
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
rpmD; 50S ribosomal protein L30
PLM4_65_b1_redo_sep16_scaffold_2912_12
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9662..10210)
DNA (549bp) protein (183aa)
30S ribosomal protein S5 Tax=alpha proteobacterium BAL199 RepID=A8TZJ4_9PROT
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
30S ribosomal protein S5
PLM4_65_b1_redo_sep16_scaffold_2912_13
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10238..10603)
DNA (366bp) protein (122aa)
50S ribosomal protein L18 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IQI8_9BRAD
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
50S ribosomal protein L18
PLM4_65_b1_redo_sep16_scaffold_2912_14
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10638..11171)
DNA (534bp) protein (178aa)
50S ribosomal protein L6 Tax=Azospirillum sp. (strain B510) RepID=D3NS55_AZOS1
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
PLM4_65_b1_redo_sep16_scaffold_2912_15
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11189..11587)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 Tax=SAR116 cluster alpha proteobacterium HIMB100 RepID=G5ZX97_9PROT
rpsH; 30S ribosomal protein S8
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_2912_16
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11598..11903)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=RS14_RHOCS
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000255|HAMAP-Rule:MF_00537}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
PLM4_65_b1_redo_sep16_scaffold_2912_17
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11924..12466)
DNA (543bp) protein (181aa)
50S ribosomal protein L5 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FN14_PHAMO
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
rplE; 50S ribosomal protein L5
PLM4_65_b1_redo_sep16_scaffold_2912_18
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12477..12812)
DNA (336bp) protein (112aa)
50S ribosomal protein L24 Tax=Oceanibaculum indicum P24 RepID=K2K8G2_9PROT
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
rplX; 50S ribosomal protein L24
PLM4_65_b1_redo_sep16_scaffold_2912_19
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12824..13192)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 Tax=Caenispirillum salinarum AK4 RepID=K9GX18_9PROT
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
rplN; 50S ribosomal subunit protein L14
PLM4_65_b1_redo_sep16_scaffold_2912_20
Acetobacter sp. CAG:977, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13221..13484)
DNA (264bp) protein (88aa)
30S ribosomal protein S17 Tax=Acetobacter sp. CAG:977 RepID=R5PZA2_9PROT
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; environmental samples.;" source="Acetobacter sp. CAG:977.;"
PLM4_65_b1_redo_sep16_scaffold_2912_21
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13494..13712)
DNA (219bp) protein (73aa)
50S ribosomal protein L29 Tax=Ponticaulis koreensis RepID=UPI0003B3BC1B
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
rpmC; 50S ribosomal subunit protein L29
PLM4_65_b1_redo_sep16_scaffold_2912_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13717..14136)
DNA (420bp) protein (140aa)
50S ribosomal protein L16 Tax=Oceanibaculum indicum P24 RepID=K2ITH5_9PROT
50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
PLM4_65_b1_redo_sep16_scaffold_2912_23
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14143..14850)
DNA (708bp) protein (236aa)
30S ribosomal protein S3 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8Q7_AZOL4
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
rpsC; 30S ribosomal protein S3
PLM4_65_b1_redo_sep16_scaffold_2912_24
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14851..15267)
DNA (417bp) protein (139aa)
50S ribosomal protein L22 Tax=Methyloferula stellata RepID=UPI0003716B93
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
rplV; 50S ribosomal protein L22
PLM4_65_b1_redo_sep16_scaffold_2912_25
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15270..15554)
DNA (285bp) protein (95aa)
30S ribosomal protein S19 Tax=Azospirillum amazonense Y2 RepID=G1Y221_9PROT
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
rpsS; 30S ribosomal protein S19
PLM4_65_b1_redo_sep16_scaffold_2912_26
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15567..16382)
DNA (816bp) protein (272aa)
50S ribosomal protein L2 Tax=Acidocella sp. MX-AZ02 RepID=K5ZI87_9PROT
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
LSU ribosomal protein L2P
PLM4_65_b1_redo_sep16_scaffold_2912_27
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16387..16698)
DNA (312bp) protein (104aa)
50S ribosomal protein L23 Tax=Caenispirillum salinarum AK4 RepID=K9GVR0_9PROT
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
rplW; 50S ribosomal protein L23
PLM4_65_b1_redo_sep16_scaffold_2912_28
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16695..17378)
DNA (684bp) protein (228aa)
50S ribosomal protein L4 Tax=Caenispirillum salinarum AK4 RepID=K9HFU0_9PROT
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
rplD; 50S ribosomal protein L4
PLM4_65_b1_redo_sep16_scaffold_2912_29

Not on your lists


comp(17378..18106)
DNA (729bp) protein (243aa)
50S ribosomal protein L3 Tax=Sphingomonas sp. KC8 RepID=UPI0002488B41
Uncharacterized protein {ECO:0000313|EMBL:KKL88844.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rplC; 50S ribosomal protein L3
PLM4_65_b1_redo_sep16_scaffold_2912_30
SAR116 cluster alpha proteobacterium HIMB100, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18106..18432)
DNA (327bp) protein (109aa)
30S ribosomal protein S10 Tax=Fodinicurvata sediminis RepID=UPI0003B3955E
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; species="Bacteria; Proteobacteria; Alphaproteobacteria; SAR116 cluster.;" source="SAR116 cluster alpha proteobacterium HIMB100.;"
SSU ribosomal protein S10p (S20e)
Displaying items 1-30 of 31 in total

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