ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_2930

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2930_1
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1486
DNA (1485bp) protein (495aa)
B12-dependent methionine synthase Tax=Azospirillum amazonense Y2 RepID=G1XZR7_9PROT
B12-dependent methionine synthase {ECO:0000313|EMBL:EGY01237.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase
PLM4_65_b1_redo_sep16_scaffold_2930_2
unknown

Not on your lists

1554..1862
DNA (309bp) protein (103aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2930_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1873..2742)
DNA (870bp) protein (290aa)
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BU20_DELAS
N-acetylmuramoyl-L-alanine amidase family protein {ECO:0000313|EMBL:KFJ10114.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
PLM4_65_b1_redo_sep16_scaffold_2930_4
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2951..3727
DNA (777bp) protein (259aa)
CysQ protein Tax=Azospirillum sp. (strain B510) RepID=D3NUU4_AZOS1
3'-5'-bisphosphate nucleotidase {ECO:0000313|EMBL:KJR64778.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
cysQ; CysQ protein
PLM4_65_b1_redo_sep16_scaffold_2930_5
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3730..4728
DNA (999bp) protein (333aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
Putative translation factor Tax=Phaeospirillum fulvum MGU-K5 RepID=S9S3N0_PHAFV
translation factor Sua5
PLM4_65_b1_redo_sep16_scaffold_2930_6
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4741..6498)
DNA (1758bp) protein (586aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI00035E9ADC
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_65_b1_redo_sep16_scaffold_2930_7
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6528..8075)
DNA (1548bp) protein (516aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI00035F8661
AMP-dependent synthetase and ligase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_2930_8
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8244..9413)
DNA (1170bp) protein (390aa)
Methionine synthase vitamin-B12 independent protein Tax=Pantoea sp. (strain At-9b) RepID=E6WLZ4_PANSA
Methionine synthase vitamin-B12 independent protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM4_65_b1_redo_sep16_scaffold_2930_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9504..10673)
DNA (1170bp) protein (390aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI0002FB0ED0
Extracellular ligand-binding receptor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_2930_10
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10799..11416)
DNA (618bp) protein (206aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI0002DE3D49
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABE42946.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
PLM4_65_b1_redo_sep16_scaffold_2930_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11490..12059)
DNA (570bp) protein (190aa)
Uncharacterized protein Tax=Rhodovulum sp. PH10 RepID=J9DSX7_9RHOB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJW09522.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
PLM4_65_b1_redo_sep16_scaffold_2930_12
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12296..13759
DNA (1464bp) protein (488aa)
Putative FAD-binding dehydrogenase Tax=Oceanibaculum indicum P24 RepID=K2KJ35_9PROT
Putative FAD-binding dehydrogenase {ECO:0000313|EMBL:EKE77295.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
FAD linked oxidase domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_2930_13
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14094..15113
DNA (1020bp) protein (340aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TV87_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP63504.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
ssuA; Putative aliphatic sulfonates-binding protein
PLM4_65_b1_redo_sep16_scaffold_2930_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15126..15911
DNA (786bp) protein (262aa)
ABC transporter, ATP-binding component Tax=Azospirillum brasilense Sp245 RepID=G8AEU3_AZOBR
ABC transporter, ATP-binding component
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM4_65_b1_redo_sep16_scaffold_2930_15
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15904..16716
DNA (813bp) protein (271aa)
ABC transporter, permease component Tax=Azospirillum brasilense Sp245 RepID=G8AEU4_AZOBR
ABC transporter, permease component
ABC transporter, permease component {ECO:0000313|EMBL:CCC98917.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
PLM4_65_b1_redo_sep16_scaffold_2930_16
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16728..17099
DNA (372bp) protein (124aa)
Isochorismate pyruvate lyase Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IR55_9BRAD
Isochorismate pyruvate lyase {ECO:0000313|EMBL:ERF85254.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
chorismate mutase
PLM4_65_b1_redo_sep16_scaffold_2930_17
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17096..18427
DNA (1332bp) protein (444aa)
FAD dependent oxidoreductase Tax=Bradyrhizobium japonicum RepID=UPI00036A79FB
Uncharacterized protein {ECO:0000313|EMBL:BAR59702.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2930_18
unknown

Not on your lists

18468..18536
DNA (69bp) protein (23aa)

This feature has no annotations

Displaying 18 items

View Taxonomy