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PLM4_65_b1_redo_sep16_scaffold_2998

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2998_1
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..2459
DNA (2457bp) protein (819aa)
Peptidase families S8 and S53 domain protein Tax=Brevundimonas sp. BAL3 RepID=B4WCZ3_9CAUL
Peptidase families S8 and S53 domain protein {ECO:0000313|EMBL:EDX79419.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
peptidase S8/S53 subtilisin kexin sedolisin
PLM4_65_b1_redo_sep16_scaffold_2998_2
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2670..4025
DNA (1356bp) protein (452aa)
Putative uncharacterized protein Tax=Brevundimonas sp. BAL3 RepID=B4WCZ4_9CAUL
Putative uncharacterized protein {ECO:0000313|EMBL:EDX81776.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2998_3
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4289..5446
DNA (1158bp) protein (386aa)
pntAA; NAD(P) transhydrogenase subunit alpha part 1 (EC:1.6.1.2)
NAD(P) transhydrogenase subunit alpha part 1 {ECO:0000313|EMBL:ACI99464.1}; EC=1.6.1.2 {ECO:0000313|EMBL:ACI99464.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
NAD(P) transhydrogenase subunit alpha Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITS8_RHOCS
PLM4_65_b1_redo_sep16_scaffold_2998_4
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5540..5992
DNA (453bp) protein (151aa)
NAD(P) transhydrogenase subunit alpha Tax=Thalassospira profundimaris WP0211 RepID=K2L9F4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KJV09911.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
NAD(P) transhydrogenase subunit alpha
PLM4_65_b1_redo_sep16_scaffold_2998_5
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5996..7408
DNA (1413bp) protein (471aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
NAD(P) transhydrogenase subunit beta Tax=Azospirillum sp. (strain B510) RepID=D3NZP4_AZOS1
NAD synthetase
PLM4_65_b1_redo_sep16_scaffold_2998_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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7693..7932
DNA (240bp) protein (80aa)
Putative uncharacterized protein Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV16_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_2998_7
Rhodobacteraceae bacterium KLH11, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8119..9663)
DNA (1545bp) protein (515aa)
hypothetical protein Tax=Robiginitomaculum antarcticum RepID=UPI00037CBE46
Hemolysin-type calcium-binding protein {ECO:0000313|EMBL:EEE37667.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium KLH11.;"
outer membrane adhesin-like protein
PLM4_65_b1_redo_sep16_scaffold_2998_8
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10365..12350)
DNA (1986bp) protein (662aa)
Uncharacterized protein Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EGX2_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ35416.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
PLM4_65_b1_redo_sep16_scaffold_2998_9
unknown

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comp(12504..12935)
DNA (432bp) protein (144aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2998_10
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13397..14461)
DNA (1065bp) protein (355aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
dihydroorotate dehydrogenase 2 (EC:1.3.98.1)
Dihydroorotate dehydrogenase (quinone) Tax=Magnetospirillum sp. SO-1 RepID=M2Y780_9PROT
PLM4_65_b1_redo_sep16_scaffold_2998_11
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14458..14802)
DNA (345bp) protein (115aa)
Uncharacterized protein Tax=Azospirillum sp. (strain B510) RepID=D3NXI6_AZOS1
Glutathione S-transferase {ECO:0000313|EMBL:KJR65706.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2998_12
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14931..15728
DNA (798bp) protein (266aa)
Enoyl-CoA hydratase/isomerase Tax=Roseovarius sp. 217 RepID=A3W6I2_9RHOB
Enoyl-CoA hydratase {ECO:0000313|EMBL:KEJ94353.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
enoyl-CoA hydratase/isomerase
PLM4_65_b1_redo_sep16_scaffold_2998_13
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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15845..18625
DNA (2781bp) protein (927aa)
formate dehydrogenase subunit alpha Tax=Fodinicurvata sediminis RepID=UPI0003B3DD83
Formate dehydrogenase subunit alpha {ECO:0000313|EMBL:EWY39126.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
formate dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_2998_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18876..19724
DNA (849bp) protein (283aa)
Uncharacterized protein Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YXG0_9RHIZ
Strain MEJ076 contig_11, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ02250.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2998_15
Cyanothece sp. PCC 7424, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

19788..20855
DNA (1068bp) protein (356aa)
Rieske (2Fe-2S) domain protein Tax=Cyanothece sp. (strain PCC 7424) RepID=B7K7B5_CYAP7
Rieske (2Fe-2S) domain-containing protein
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ACK69683.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7424) (Synechococcus sp. (strain ATCC; 29155)).;"
PLM4_65_b1_redo_sep16_scaffold_2998_16
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21108..21788
DNA (681bp) protein (227aa)
RNA polymerase sigma-70 factor, ECF family protein Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IVM4_RHOCS
RNA polymerase sigma-70 factor, ECF family protein
RNA polymerase sigma-70 factor, ECF family protein {ECO:0000313|EMBL:ACJ00348.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
PLM4_65_b1_redo_sep16_scaffold_2998_17
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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21785..22450
DNA (666bp) protein (222aa)
Transcriptional activator ChrR Tax=Oceanibaculum indicum P24 RepID=K2J2P5_9PROT
Transcriptional activator ChrR {ECO:0000313|EMBL:EKE77236.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
chrR; transcriptional activator ChrR
Displaying 17 items

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