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PLM4_65_b1_redo_sep16_scaffold_2822

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2822_1
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2..1075
DNA (1074bp) protein (358aa)
Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00036}; EC=6.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00036};; Alanyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00036}; Short=AlaRS {ECO:0000255|HAMAP-Rule:MF_00036};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
Alanine--tRNA ligase Tax=Geobacter metallireducens RepID=SYA_GEOMG
alaS; alanyl-tRNA ligase
PLM4_65_b1_redo_sep16_scaffold_2822_2
Lyngbya sp. PCC 8106, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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1182..3083
DNA (1902bp) protein (634aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA300-N18 RepID=UPI000369E07F
surface antigen variable number repeat protein
Surface antigen variable number protein {ECO:0000313|EMBL:EAW37378.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya sp. (strain PCC 8106) (Lyngbya aestuarii (strain CCY9616)).;"
PLM4_65_b1_redo_sep16_scaffold_2822_3
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3087..10034
DNA (6948bp) protein (2316aa)
Uncharacterized protein Tax=Polaromonas sp. CF318 RepID=J3CYG1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL81019.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2822_4
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10072..10902)
DNA (831bp) protein (277aa)
Outer membrane assembly lipoprotein YfiO Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E8I2_GEOLS
outer membrane assembly lipoprotein YfiO
Tax=RBG_13_Deltaproteobacteria_65_10_curated
PLM4_65_b1_redo_sep16_scaffold_2822_5
unknown

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11072..11356
DNA (285bp) protein (95aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2822_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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11373..12002
DNA (630bp) protein (210aa)
CDP-alcohol phosphatidyltransferase bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
CDP-alcohol phosphatidyltransferase
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_2822_7
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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11992..12306
DNA (315bp) protein (105aa)
Uncharacterized protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LJZ1_HALO1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY18498.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM4_65_b1_redo_sep16_scaffold_2822_8
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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12313..13209
DNA (897bp) protein (299aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; Short=CMK {ECO:0000255|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000255|HAMAP-Rule:MF_00061};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=ISPE_SYNFM
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
PLM4_65_b1_redo_sep16_scaffold_2822_trna_1
unknown

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13189..13260
DNA (72bp)
transferRNA Gln
PLM4_65_b1_redo_sep16_scaffold_2822_9
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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13286..14236
DNA (951bp) protein (317aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M5U3_GEODF
Tax=RBG_13_Deltaproteobacteria_43_22_curated
PLM4_65_b1_redo_sep16_scaffold_2822_10
R_Deltaproteobacteria_44_16, Deltaproteobacteria, Proteobacteria, Bacteria

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14256..14924
DNA (669bp) protein (223aa)
rplY; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
rplY; 50S ribosomal protein L25/general stress protein Ctc
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_16_curated
PLM4_65_b1_redo_sep16_scaffold_2822_11
Synechococcus sp. JA-3-3Ab, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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14937..15533
DNA (597bp) protein (199aa)
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000255|HAMAP-Rule:MF_00083}; Short=PTH {ECO:0000255|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000255|HAMAP-Rule:MF_00083};; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium; Yellowstone A-Prime).;"
Peptidyl-tRNA hydrolase Tax=Leptolyngbya sp. PCC 6406 RepID=L8LCT3_9CYAN
PLM4_65_b1_redo_sep16_scaffold_2822_12
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15546..16151)
DNA (606bp) protein (202aa)
PhnB Tax=uncultured bacterium RepID=K2C9A7_9BACT
hypothetical protein
Tax=RBG_16_Anaeromyxobacter_69_14_curated
PLM4_65_b1_redo_sep16_scaffold_2822_13
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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16314..16793
DNA (480bp) protein (160aa)
30S ribosomal protein S6 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=RS6_DESAA
rpsF; 30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000255|HAMAP-Rule:MF_00360}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatibacillum alkenivorans (strain AK-01).;"
PLM4_65_b1_redo_sep16_scaffold_2822_14
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16800..17075
DNA (276bp) protein (92aa)
30S ribosomal protein S18 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=RS18_SYNFM
30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000255|HAMAP-Rule:MF_00270}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
PLM4_65_b1_redo_sep16_scaffold_2822_15
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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17084..17614
DNA (531bp) protein (177aa)
50S ribosomal protein L9 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJA2_CHLTF
50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_2822_16
Paenibacillus curdlanolyticus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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17665..18876
DNA (1212bp) protein (404aa)
Replicative DNA helicase Tax=Paenibacillus curdlanolyticus YK9 RepID=E0I9C0_9BACL
Replicative DNA helicase {ECO:0000313|EMBL:EFM11004.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus curdlanolyticus YK9.;"
replicative DNA helicase
Displaying 17 items

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