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PLM4_65_b1_redo_sep16_scaffold_3127

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3127_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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3..926
DNA (924bp) protein (308aa)
linoleoyl-CoA desaturase Tax=Gemmata obscuriglobus RepID=UPI00016C46BB
fatty acid desaturase
Tax=CSP1_6_Rokubacteria
PLM4_65_b1_redo_sep16_scaffold_3127_2
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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978..3374
DNA (2397bp) protein (799aa)
Putative ATP-dependent DNA/RNA helicase Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z233_AZOL4
putative ATP-dependent DNA/RNA helicase
Putative ATP-dependent DNA/RNA helicase {ECO:0000313|EMBL:CBS85436.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
PLM4_65_b1_redo_sep16_scaffold_3127_3

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3433..4806
DNA (1374bp) protein (458aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN04041.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Pyrrolo-quinoline quinone bin=GWC2_Bacteroidetes_40_22 species=Rhodopirellula sallentina genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3127_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(4727..5185)
DNA (459bp) protein (153aa)
Uncharacterized protein bin=GWC2_Ignavibacteria_56_12 species=Cesiribacter andamanensis genus=Cesiribacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3127_5
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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5243..5689
DNA (447bp) protein (149aa)
hypothetical protein Tax=Chitiniphilus shinanonensis RepID=UPI0003827327
CoA-binding domain-containing protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3127_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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5903..6502
DNA (600bp) protein (200aa)
Putative uncharacterized protein Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IFK2_ANADE
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3127_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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6601..7170
DNA (570bp) protein (190aa)
Uncharacterized protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BVD3_NITHN
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3127_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(7341..7727)
DNA (387bp) protein (129aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3127_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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7907..8833
DNA (927bp) protein (309aa)
ROK family protein Tax=Oceanibaculum indicum P24 RepID=K2KFG9_9PROT
ROK family protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3127_10
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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8861..9064
DNA (204bp) protein (68aa)
Uncharacterized protein Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QXP6_PIRSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB16231.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
PLM4_65_b1_redo_sep16_scaffold_3127_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(9072..10298)
DNA (1227bp) protein (409aa)
major facilitator transporter bin=CNBR_ACIDO species=Paenibacillus vortex genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
arabinose efflux permease family protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3127_12
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(10295..11431)
DNA (1137bp) protein (379aa)
putative asparaginase
Peptidase T2 asparaginase 2 bin=GWA2_Ignavibacteria_55_11 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_3127_13
CG_Mariprof_01, Zetaproteobacteria, Proteobacteria, Bacteria

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comp(11714..12253)
DNA (540bp) protein (180aa)
S-isoprenylcysteine methyltransferase-like protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=CG_Mariprof_01
PLM4_65_b1_redo_sep16_scaffold_3127_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12260..13267)
DNA (1008bp) protein (336aa)
ADP-heptose--LPS heptosyltransferase; K02841 heptosyltransferase I [EC:2.4.-.-] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ADP-heptose--LPS heptosyltransferase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3127_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(13264..13743)
DNA (480bp) protein (160aa)
Cytidyltransferase-related domain protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEC4_CHLTF
cytidyltransferase-related domain-containing protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3127_16
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(13740..14774)
DNA (1035bp) protein (345aa)
PfkB domain protein bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carbohydrate kinase PfkB
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3127_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(14771..15358)
DNA (588bp) protein (196aa)
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3127_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(15355..16341)
DNA (987bp) protein (329aa)
Lipopolysaccharide heptosyltransferase II Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SR3_SOLUE
lipopolysaccharide heptosyltransferase II
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3127_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16338..17495)
DNA (1158bp) protein (386aa)
Lipid A biosynthesis lauroyl acyltransferase bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
lipid A biosynthesis acyltransferase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3127_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

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comp(17492..17896)
DNA (405bp) protein (135aa)
lpxK; Tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase Tax=Aminomonas paucivorans DSM 12260 RepID=E3CW75_9BACT
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
Displaying 20 items

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