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PLM4_65_b1_redo_sep16_scaffold_3606

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3606_1
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(3..1004)
DNA (1002bp) protein (334aa)
Predicted protein Tax=Physcomitrella patens subsp. patens RepID=A9TZ98_PHYPA
acetylornithine and succinylornithine aminotransferase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3606_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1001..1765)
DNA (765bp) protein (255aa)
N-acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=ARGB_RUBXD
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3606_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(1762..2754)
DNA (993bp) protein (331aa)
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8A9L5_THEID
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3606_4
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

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3034..4197
DNA (1164bp) protein (388aa)
Butyryl-CoA dehydrogenase Tax=uncultured Acidobacteria bacterium RepID=H5SIT0_9BACT
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:BAL56066.1}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
butyryl-CoA dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_3606_5
unknown

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comp(4431..4808)
DNA (378bp) protein (126aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3606_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(4834..5550)
DNA (717bp) protein (239aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
signal peptidase I (EC:3.4.21.89)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_3606_7
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(5660..6550)
DNA (891bp) protein (297aa)
Elongation factor 4 {ECO:0000255|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000255|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000255|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000255|HAMAP-Rule:MF_00071}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
Elongation factor 4 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=LEPA_ACIC5
lepA; GTP-binding protein LepA
PLM4_65_b1_redo_sep16_scaffold_3606_8
unknown

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6790..7086
DNA (297bp) protein (99aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Nocardiopsis halotolerans genus=Nocardiopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PLM4_65_b1_redo_sep16_scaffold_3606_9
unknown

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comp(7350..7922)
DNA (573bp) protein (191aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3606_10
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

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8016..8390
DNA (375bp) protein (125aa)
Response regulator receiver protein bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
response regulator receiver protein
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_65_b1_redo_sep16_scaffold_3606_11
GWC1_Azotobacter_66_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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8419..10077
DNA (1659bp) protein (553aa)
CheA signal transduction histidine kinase bin=GWD2_Nitrospirae-related_57_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
CheA signal transduction histidine kinase
Tax=GWC1_Azotobacter_66_9_curated
PLM4_65_b1_redo_sep16_scaffold_3606_12
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

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10083..10907
DNA (825bp) protein (275aa)
ATPase, putative bin=GWC2_Nitrospirae_57_13 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
ATPase
Tax=GWC2_Nitrospirae_57_13_curated
PLM4_65_b1_redo_sep16_scaffold_3606_13
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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10914..11780
DNA (867bp) protein (289aa)
CheW protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M5G9_GEODF
chemotaxis protein CheW
Scaffold protein CheW associated with MCPs of classes 40H and 40+24H {ECO:0000313|EMBL:ACM21728.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_b1_redo_sep16_scaffold_3606_14
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

11786..14068
DNA (2283bp) protein (761aa)
methyl-accepting chemotaxis sensory transducer
Methyl-accepting chemotaxis sensory transducer bin=GWC2_CP_Nitrospirae-rel_42_7 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_65_b1_redo_sep16_scaffold_3606_15
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14094..16466
DNA (2373bp) protein (791aa)
PBS lyase HEAT domain protein repeat-containing protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M5G6_GEODF
PBS lyase
HEAT-like repeat-containing protein {ECO:0000313|EMBL:ACM21725.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_b1_redo_sep16_scaffold_3606_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16463..17335
DNA (873bp) protein (291aa)
protein-glutamate O-methyltransferase (EC:2.1.1.80)
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Chemotaxis protein methyltransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G4Z5_GEOUR
PLM4_65_b1_redo_sep16_scaffold_3606_17
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

17332..18357
DNA (1026bp) protein (342aa)
Chemotaxis response regulator protein-glutamate methylesterase bin=GWC2_Nitrospirae_57_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
CheB methylesterase
Tax=GWC2_Nitrospirae_57_13_curated
PLM4_65_b1_redo_sep16_scaffold_3606_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

18382..20196
DNA (1815bp) protein (605aa)
Response regulator receiver protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M915_GEODF
response regulator receiver protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3606_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

20221..21027
DNA (807bp) protein (269aa)
Putative GAF sensor protein bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
GAF domain-containing protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3606_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

21164..22633
DNA (1470bp) protein (490aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036CB8E7
magnesium protoporphyrin chelatase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3606_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

22641..22943
DNA (303bp) protein (101aa)
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 21 items

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