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PLM4_65_b1_redo_sep16_scaffold_3908

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3908_1
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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3..1166
DNA (1164bp) protein (388aa)
Transcriptional regulator, GntR family with aminotransferase domain protein Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PLR9_KRIFD
GntR family transcriptional regulator
Transcriptional regulator, GntR family with aminotransferase domain protein {ECO:0000313|EMBL:ADB32499.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM4_65_b1_redo_sep16_scaffold_3908_2
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(1170..2387)
DNA (1218bp) protein (406aa)
Uncharacterized protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MDV2_RHOM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY49096.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
PLM4_65_b1_redo_sep16_scaffold_3908_3
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(2384..3604)
DNA (1221bp) protein (407aa)
beta-N-acetylhexosaminidase., beta-lactamase (EC:3.5.2.6 3.2.1.52)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
Beta-N-acetylhexosaminidase., Beta-lactamase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJI0_RHOMR
PLM4_65_b1_redo_sep16_scaffold_3908_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(3601..4872)
DNA (1272bp) protein (424aa)
hypothetical protein Tax=Marinimicrobia RepID=UPI00036E359B
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_3908_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

4887..5513
DNA (627bp) protein (209aa)
hypothetical protein bin=GWC2_NOV_55_46 species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
outer membrane lipoprotein carrier protein LolA
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_3908_6
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

5510..7261
DNA (1752bp) protein (584aa)
type II and III secretion system protein; K02453 general secretion pathway protein D bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
type II and III secretion system protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_3908_7
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

comp(7277..8584)
DNA (1308bp) protein (436aa)
CBS domain protein bin=GWC2_Deltaproteobacteria_42_51 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
PLM4_65_b1_redo_sep16_scaffold_3908_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8729..10150
DNA (1422bp) protein (474aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LF40_CHLTF
PLM4_65_b1_redo_sep16_scaffold_3908_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

10175..11647
DNA (1473bp) protein (491aa)
2-oxoglutarate dehydrogenase E2 component {ECO:0000313|EMBL:CDM66810.1}; EC=2.3.1.61 {ECO:0000313|EMBL:CDM66810.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
dihydrolipoyllysine-residue succinyltransferase (EC:2.3.1.61)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000365A2B2
PLM4_65_b1_redo_sep16_scaffold_3908_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11644..12315
DNA (672bp) protein (224aa)
lipoate-protein ligase B (EC:2.3.1.181)
Octanoyltransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJ06_CHLTF
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_3908_11
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12372..12842
DNA (471bp) protein (157aa)
Uncharacterized protein Tax=Burkholderia cenocepacia RepID=A0AYA2_BURCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJK50788.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
PLM4_65_b1_redo_sep16_scaffold_3908_12
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(12896..14008)
DNA (1113bp) protein (371aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q027C5_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ82888.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_3908_13
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(14111..14986)
DNA (876bp) protein (292aa)
hypothetical protein Tax=Flexithrix dorotheae RepID=UPI0003717F40
Oxidoreductase, aldo/keto reductase family {ECO:0000313|EMBL:EDY82449.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
oxidoreductase of aldo/keto reductase family
PLM4_65_b1_redo_sep16_scaffold_3908_14
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15085..16074
DNA (990bp) protein (330aa)
Uncharacterized protein Tax=Cystobacter fuscus DSM 2262 RepID=S9QRC0_9DELT
APHP domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:EPX59138.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
PLM4_65_b1_redo_sep16_scaffold_3908_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(16089..16970)
DNA (882bp) protein (294aa)
Hypothetical cytosolic protein bin=GWF2_Methylomirabilis_70_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_65_b1_redo_sep16_scaffold_3908_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(16957..17757)
DNA (801bp) protein (267aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_65_b1_redo_sep16_scaffold_3908_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(17846..19660)
DNA (1815bp) protein (605aa)
ABC-type multidrug transport system, ATPase and permease component Tax=Singulisphaera acidiphila RepID=L0DAT4_SINAD
ABC transporter related protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_3908_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(19644..21452)
DNA (1809bp) protein (603aa)
ABC-type multidrug transport system, ATPase and permease component Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D976_SINAD
ABC transporter related protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_3908_19
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

21568..22128
DNA (561bp) protein (187aa)
riboflavin biosynthesis protein ribD (EC:1.1.1.193)
Riboflavin biosynthesis protein ribD Tax=Sorangium cellulosum (strain So ce56) RepID=A9G1S1_SORC5
Tax=RBG_16_Caldithrix_48_16_curated
PLM4_65_b1_redo_sep16_scaffold_3908_20
unknown

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22197..22460
DNA (264bp) protein (88aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3908_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

22457..23047
DNA (591bp) protein (197aa)
Putative uncharacterized protein bin=GWC2_Planctomycete_KSU_39_26 species=Chroococcidiopsis thermalis genus=Chroococcidiopsis taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_3908_22
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

23122..23391
DNA (270bp) protein (90aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4XVF2_SORCE
hypothetical protein
Tax=RBG_16_Acidobacteria_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_3908_23
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23379..23780
DNA (402bp) protein (134aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
Ribonuclease VapC Tax=Sorangium cellulosum So0157-2 RepID=S4XT11_SORCE
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3908_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(23792..24139)
DNA (348bp) protein (116aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IL00_KORVE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_3908_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(24151..24735)
DNA (585bp) protein (195aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NS7_SOLUE
ECF subfamily RNA polymerase sigma-24 factor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_3908_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

24972..25301
DNA (330bp) protein (110aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035FB25F
transcriptional regulator, PadR-family
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_3908_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

25310..27949
DNA (2640bp) protein (880aa)
ABC transporter permease Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UN69_MYXSD
permease
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_3908_28
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28090..28860
DNA (771bp) protein (257aa)
Short-chain dehydrogenase/reductase SDR Tax=Paenibacillus polymyxa RepID=E3EGA4_PAEPS
short-chain dehydrogenase/reductase sdr
Sugar dehydrogenase {ECO:0000313|EMBL:ADO56594.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa (strain SC2) (Bacillus polymyxa).;"
PLM4_65_b1_redo_sep16_scaffold_3908_29
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28868..29755
DNA (888bp) protein (296aa)
hypothetical protein Tax=Moritella dasanensis RepID=UPI0003081D22
RNA polymerase, sigma subunit, ECF family
Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
PLM4_65_b1_redo_sep16_scaffold_3908_30
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

29831..30721
DNA (891bp) protein (297aa)
twin-arginine translocation pathway signal protein (EC:3.1.1.45)
Carboxymethylenebutenolidase Tax=Hydrocarboniphaga effusa AP103 RepID=I8TC49_9GAMM
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Displaying items 1-30 of 31 in total

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