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PLM4_65_b1_redo_sep16_scaffold_1579

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1579_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(1..1446)
DNA (1446bp) protein (482aa)
TonB-dependent receptor, plug bin=CNBR_ACIDO species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
TonB-dependent receptor plug
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_1579_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

1710..2480
DNA (771bp) protein (257aa)
histidinol-phosphate phosphatase (EC:3.1.3.15)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035C9295
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1579_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

2484..3317
DNA (834bp) protein (278aa)
fpgX; DNA-formamidopyrimidine glycosylase (EC:3.2.2.23)
DNA-formamidopyrimidine glycosylase Tax=Sorangium cellulosum (strain So ce56) RepID=A9ERJ1_SORC5
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1579_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

3503..3721
DNA (219bp) protein (73aa)
translation initiation factor IF-1 bin=CNBR_ACIDO species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
translation initiation factor 1
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1579_5
Spirochaeta thermophila, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

3828..4403
DNA (576bp) protein (192aa)
HAD superfamily (Subfamily IA) hydrolase, TIGR02254 Tax=Spirochaeta thermophila (strain ATCC 700085 / DSM 6578 / Z-1203) RepID=G0GFN5_SPITZ
HAD superfamily hydrolase
HAD superfamily (Subfamily IA) hydrolase, TIGR02254 {ECO:0000313|EMBL:AEJ62434.1}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta thermophila (strain ATCC 700085 / DSM 6578 / Z-1203).;"
PLM4_65_b1_redo_sep16_scaffold_1579_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

4484..5362
DNA (879bp) protein (293aa)
PDZ/DHR/GLGF domain-containing protein bin=bin7_NC10_sister species=Methylobacterium populi genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
serine protease
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1579_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

5359..6765
DNA (1407bp) protein (469aa)
hydroxydechloroatrazine ethylaminohydrolase (EC:3.5.99.3)
Hydroxydechloroatrazine ethylaminohydrolase AtzB bin=GWA2_Elusimicrobia_69_24 species=Clostridium acidurici genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1579_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

6767..8977
DNA (2211bp) protein (737aa)
Putative xanthine dehydrogenase bin=GWA2_Elusimicrobia_69_24 species=uncultured bacterium 66 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1579_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

8974..9507
DNA (534bp) protein (178aa)
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZD58_TERRK bin=16ft_combo_ws3_JS1 species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
(2Fe-2S)-binding protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1579_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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9504..10367
DNA (864bp) protein (288aa)
Molybdopterin dehydrogenase FAD-binding bin=GWA2_Elusimicrobia_69_24 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
FAD-binding molybdopterin dehydrogenase protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1579_11
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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10364..11755
DNA (1392bp) protein (464aa)
Pyruvate/Phosphoenolpyruvate kinase domain protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08NX3_STIAD
pyruvate/phosphoenolpyruvate kinase domain-containing protein
Pyruvate/Phosphoenolpyruvate kinase domain protein {ECO:0000313|EMBL:ADO68832.1}; Uncharacterized protein {ECO:0000313|EMBL:EAU62178.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
PLM4_65_b1_redo_sep16_scaffold_1579_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

11843..12274
DNA (432bp) protein (144aa)
Amino acid-binding ACT bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1579_13
unknown

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12312..12476
DNA (165bp) protein (55aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1579_14
CSP1_5_NC10, NC10, Bacteria

Not on your lists

12552..13946
DNA (1395bp) protein (465aa)
hypothetical protein bin=bin3_NC10 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_1579_15
CSP1_5_NC10, NC10, Bacteria

Not on your lists

13975..14355
DNA (381bp) protein (127aa)
hypothetical protein bin=bin3_NC10 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_1579_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14389..15168)
DNA (780bp) protein (260aa)
hypothetical protein Tax=SAR406 cluster bacterium SCGC AB-629-J13 RepID=UPI00037159A6
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_1579_17
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15174..15512)
DNA (339bp) protein (113aa)
5-hydroxyisourate hydrolase {ECO:0000256|RuleBase:RU361270}; Short=HIU hydrolase {ECO:0000256|RuleBase:RU361270};; Short=HIUHase {ECO:0000256|RuleBase:RU361270};; EC=3.5.2.17 {ECO:0000256|RuleBase:RU361270};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
5-hydroxyisourate hydrolase Tax=Sorangium cellulosum So0157-2 RepID=S4XQ05_SORCE
5-hydroxyisourate hydrolase
PLM4_65_b1_redo_sep16_scaffold_1579_18
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15514..16029)
DNA (516bp) protein (172aa)
Uncharacterized protein Tax=Cystobacter fuscus DSM 2262 RepID=S9QJ21_9DELT
Decarboxylase {ECO:0000313|EMBL:AKF83337.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
putative OHCU decarboxylase
PLM4_65_b1_redo_sep16_scaffold_1579_19
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16007..16990)
DNA (984bp) protein (328aa)
alc; allantoicase (EC:3.5.3.4)
Probable allantoicase {ECO:0000256|HAMAP-Rule:MF_00813}; EC=3.5.3.4 {ECO:0000256|HAMAP-Rule:MF_00813};; Allantoate amidinohydrolase {ECO:0000256|HAMAP-Rule:MF_00813}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
Probable allantoicase Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08MK1_STIAD
PLM4_65_b1_redo_sep16_scaffold_1579_20
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16977..18350)
DNA (1374bp) protein (458aa)
Allantoinase protein Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TWT4_9DELT
Allantoinase {ECO:0000313|EMBL:EYF05670.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
allantoinase
PLM4_65_b1_redo_sep16_scaffold_1579_21
unknown

Not on your lists

comp(18386..18934)
DNA (549bp) protein (183aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1579_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

19053..19592
DNA (540bp) protein (180aa)
def; peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) (EC:3.5.1.88) bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
def2; formylmethionine deformylase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1579_23
Planctopirus limnophila, Planctopirus, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(19622..20983)
DNA (1362bp) protein (454aa)
Uncharacterized protein Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SUG4_PLAL2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG69217.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
PLM4_65_b1_redo_sep16_scaffold_1579_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20983..21864)
DNA (882bp) protein (294aa)
2-keto-3-deoxy-D-arabinonate dehydratase (EC:4.2.1.-)
Fumarylacetoacetate (FAA) hydrolase bin=GWF2_Methylomirabilis_70_14 species=Candidatus Caldiarchaeum subterraneum genus=Candidatus Caldiarchaeum taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_b1_redo_sep16_scaffold_1579_25
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(21861..23687)
DNA (1827bp) protein (609aa)
hypothetical protein Tax=Flexithrix dorotheae RepID=UPI0003802D94
hypothetical protein
Tax=RBG_13_Planctomycetes_62_9_curated
PLM4_65_b1_redo_sep16_scaffold_1579_26
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

23842..25137
DNA (1296bp) protein (432aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2A8E0_9BACT
putative alternative thymidylate synthase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Displaying 26 items

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