ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_2767

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2767_1
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


3..1010
DNA (1008bp) protein (336aa)
DNA gyrase subunit A bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
DNA gyrase subunit A
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

1007..1687
DNA (681bp) protein (227aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1688..3871)
DNA (2184bp) protein (728aa)
uvrD; DNA helicase II (EC:3.6.1.-) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
UvrD/REP helicase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3880..5721)
DNA (1842bp) protein (614aa)
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDU4_CHLTF
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_5
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(5732..6385)
DNA (654bp) protein (218aa)
glmU; bifunctional protein GlmU (EC:2.7.7.23 2.3.1.157)
Bifunctional protein GlmU Tax=Candidatus Nitrospira defluvii RepID=D8PH85_9BACT
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6418..6951)
DNA (534bp) protein (178aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00035F464D
Methyltransferase type 12
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7048..9867
DNA (2820bp) protein (940aa)
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
excinuclease ABC subunit A
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_2767_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

10048..10956
DNA (909bp) protein (303aa)
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC:3.5.1.-); K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11108..11536)
DNA (429bp) protein (143aa)
hypothetical protein bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11533..11841)
DNA (309bp) protein (103aa)
id=12555745 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11838..12197)
DNA (360bp) protein (120aa)
anti-sigma-factor antagonist; K04749 anti-sigma B factor antagonist bin=CNBR_ACIDO species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rsbV; anti-anti-sigma factor
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12197..12901)
DNA (705bp) protein (235aa)
ECF subfamily RNA polymerase sigma-24 factor bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sigma-70 family RNA polymerase sigma factor
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(13003..13845)
DNA (843bp) protein (281aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin3_NC10 organism_group=NC10
S1/P1 Nuclease
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(13873..14328)
DNA (456bp) protein (152aa)
Amidophosphoribosyltransferase, putative bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
competence protein ComF
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(14617..14970)
DNA (354bp) protein (118aa)
Transcriptional regulator, TraR/DksA family Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJ15_KORVE
TraR/DksA family transcriptional regulator
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(14988..15941)
DNA (954bp) protein (318aa)
Sigma-54 interacting regulator Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6FNL2_9DELT
fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_2767_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(15938..16285)
DNA (348bp) protein (116aa)
iojap superfamily protein; K09710 ribosome-associated protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Iojap-related protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16282..16863)
DNA (582bp) protein (194aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase Tax=Thauera RepID=C4KCZ8_THASP
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16860..17885)
DNA (1026bp) protein (342aa)
GTPase Obg Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SKC4_THEM7
GTP-binding protein Obg/CgtA
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


comp(17925..18185)
DNA (261bp) protein (87aa)
50S ribosomal protein L27 Tax=Thiorhodovibrio sp. 970 RepID=H8Z4P7_9GAMM
50S ribosomal protein L27
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


comp(18201..18515)
DNA (315bp) protein (105aa)
50S ribosomal protein L21 Tax=Lutibaculum baratangense AMV1 RepID=V4RJ23_9RHIZ
50S ribosomal protein L21
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2767_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(18902..19045)
DNA (144bp) protein (48aa)
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 22 items

View Taxonomy