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PLM4_65_coex_sep16_scaffold_54

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Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_54_1
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(323..817)
DNA (495bp) protein (165aa)
Type II secretion system pseudopilin OxpG bin=GWD2_Nitrospirae-related_57_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
oxpG; type II secretion system pseudopilin OxpG
Tax=GWC2_Nitrospirae_57_13_curated
PLM4_65_coex_sep16_scaffold_54_2
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(814..1305)
DNA (492bp) protein (164aa)
Uncharacterized protein bin=GWC2_Nitrospirae_57_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
general secretion pathway protein GspG
Tax=GWC2_Nitrospirae_57_13_curated
PLM4_65_coex_sep16_scaffold_54_3
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(1305..3641)
DNA (2337bp) protein (779aa)
Type II and III secretion system protein bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
pulQ; type II secretion system secretin lipoprotein PulQ
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_54_4
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(3653..4267)
DNA (615bp) protein (205aa)
id=3638892 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_54_5
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(4267..4827)
DNA (561bp) protein (187aa)
id=3638893 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_54_6
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(4778..5314)
DNA (537bp) protein (179aa)
Type II secretion system protein PulN, putative bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_54_7
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(5311..6138)
DNA (828bp) protein (276aa)
Putative uncharacterized protein bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
pulM; type II secretion system ATPase PulM
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_54_8
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

7030..8103
DNA (1074bp) protein (358aa)
Signal transduction histidine kinase, nitrogen specific, NtrB bin=GWC2_CP_Nitrospirae-rel_42_7 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
sensor histidine kinase NtrB-like protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_65_coex_sep16_scaffold_54_9
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8066..9424
DNA (1359bp) protein (453aa)
Sigma-54-dependent transcriptional response regulator Tax=Geobacter metallireducens RepID=Q39U11_GEOMG
sigma-54-dependent transcriptional response regulator
Sigma-54-dependent transcriptional response regulator {ECO:0000313|EMBL:ABB32263.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_54_10
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9505..11358
DNA (1854bp) protein (618aa)
Sensor histidine kinase cyclic nucleotide phosphodiesterase, GAF, GAF and HD-GYP-related domain-containing Tax=Geobacter sulfurreducens RepID=D7AKD6_GEOSK
sensor histidine kinase cyclic nucleotide phosphodiesterase
Sensor histidine kinase cyclic nucleotide phosphodiesterase, GAF, GAF and HD-GYP-related domain-containing {ECO:0000313|EMBL:AAR35315.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
PLM4_65_coex_sep16_scaffold_54_11
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(11529..12305)
DNA (777bp) protein (259aa)
Transcriptional regulator, Crp/Fnr family bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
fnr-2; CarD family transcriptional regulator
Tax=GWC2_Nitrospirae_57_9_curated
PLM4_65_coex_sep16_scaffold_54_12
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

12651..13121
DNA (471bp) protein (157aa)
Lipoprotein, putative bin=GWC2_Deltaproteobacteria_55_46 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
fibronectin type III domain-containing protein
Tax=GWC2_Nitrospirae_57_9_curated
PLM4_65_coex_sep16_scaffold_54_13
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

Not on your lists

comp(13255..14562)
DNA (1308bp) protein (436aa)
Similar to UDP-glucose/GDP-mannose dehydrogenase bin=GWC2_CP_Nitrospirae-rel_42_7 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
wbpA; UDP-N-acetyl-D-mannosaminuronate dehydrogenase
Tax=GWC2_Nitrospirae_42_7_curated
PLM4_65_coex_sep16_scaffold_54_14
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(14623..15963)
DNA (1341bp) protein (447aa)
UDP-glucose dehydrogenase bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
ugd; UDP-glucose 6-dehydrogenase
Tax=GWC2_Nitrospirae_57_9_curated
PLM4_65_coex_sep16_scaffold_54_15
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16058..16978)
DNA (921bp) protein (307aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
Glucose-1-phosphate thymidylyltransferase Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LKJ3_SYNFM
glucose-1-phosphate thymidylyltransferase
PLM4_65_coex_sep16_scaffold_54_16
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(17002..17619)
DNA (618bp) protein (206aa)
hypothetical protein
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Latescibacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_54_17
RBG_13_OD1_Falkowbacteria_39_14_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(17858..19159)
DNA (1302bp) protein (434aa)
hypothetical protein Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI000363E6BB
glycosyltransferase
Tax=RBG_13_OD1_Falkowbacteria_39_14_curated
PLM4_65_coex_sep16_scaffold_54_18
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(19379..20347)
DNA (969bp) protein (323aa)
Glycosyl transferase family 2 bin=GWF2_Planctomycetes_42_9 species=Salinisphaera shabanensis genus=Salinisphaera taxon_order=Salinisphaerales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
glycosyl transferase 2 family protein
Tax=GWF2_Planctomycetes_42_9_curated
PLM4_65_coex_sep16_scaffold_54_19

Not on your lists

comp(20414..21394)
DNA (981bp) protein (327aa)
hypothetical protein Tax=Flavobacterium sp. MS220-5C RepID=UPI00034A8550
Uncharacterized protein {ECO:0000313|EMBL:KKN89411.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_54_20

Not on your lists

comp(21369..22781)
DNA (1413bp) protein (471aa)
Uncharacterized protein Tax=Cesiribacter andamanensis AMV16 RepID=M7N3R9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKN89412.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
membrane bound O-acyl transferase MBOAT family protein
PLM4_65_coex_sep16_scaffold_54_21
GWB1_OP11_40_9_partial, Microgenomates, Bacteria

Not on your lists

comp(22969..23838)
DNA (870bp) protein (290aa)
hypothetical protein Tax=Cloacimonetes bacterium SCGC AAA252-N05 RepID=UPI00036ECF3D
Radical SAM domain protein {ECO:0000313|EMBL:KKR79576.1}; species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWB1_40_9.;"
radical SAM protein
PLM4_65_coex_sep16_scaffold_54_22
Candidatus Kuenenia stuttgartiensis, Candidatus Kuenenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(23867..25210)
DNA (1344bp) protein (448aa)
Similar to ATP-binding protein Wzt of ABC-transporter involved in LPS biosynthesis Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1T1_9BACT
Similar to ATP-binding protein Wzt of ABC-transporter involved in LPS biosynthesis {ECO:0000313|EMBL:CAJ73973.1}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Kuenenia.;" source="Candidatus Kuenenia stuttgartiensis.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_54_23
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25238..26074)
DNA (837bp) protein (279aa)
ABC-2 type transporter Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8VW95_DESAS
ABC transporter
Transport permease protein {ECO:0000256|RuleBase:RU361157}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
PLM4_65_coex_sep16_scaffold_54_24
RIFOXYC2_FULL_OD1_Falkowbacteria_36_12_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(26130..27248)
DNA (1119bp) protein (373aa)
hypothetical protein Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000362C616
coenzyme PQQ biosynthesis protein E
Tax=RIFOXYC2_FULL_OD1_Falkowbacteria_36_12_curated
PLM4_65_coex_sep16_scaffold_54_25
RBG_16_Chloroflexi_47_49_curated, Chloroflexi, Bacteria

Not on your lists

comp(27365..28243)
DNA (879bp) protein (293aa)
hypothetical protein Tax=Hoeflea sp. 108 RepID=UPI00037C0707
hypothetical protein
Tax=RBG_16_Chloroflexi_47_49_curated
PLM4_65_coex_sep16_scaffold_54_26
RBG_16_Chloroflexi_47_49_curated, Chloroflexi, Bacteria

Not on your lists

comp(28240..29178)
DNA (939bp) protein (313aa)
Glycosyl transferase family 2 Tax=Nostoc sp. PCC 7107 RepID=K9QFY4_9NOSO
family 2 glycosyl transferase
Tax=RBG_16_Chloroflexi_47_49_curated
PLM4_65_coex_sep16_scaffold_54_27
R_Deltaproteobacteria_44_53, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29336..30352)
DNA (1017bp) protein (339aa)
hypothetical protein Tax=cellular organisms RepID=UPI0003730FF0
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_53_curated
PLM4_65_coex_sep16_scaffold_54_28
Thermoanaerobacter wiegelii, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30781..32097)
DNA (1317bp) protein (439aa)
Glycosyl transferase group 1 Tax=Thermoanaerobacter wiegelii Rt8.B1 RepID=G2MV42_9THEO
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:AEM78221.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter wiegelii Rt8.B1.;"
PLM4_65_coex_sep16_scaffold_54_29
RBG_16_Bdellovibrionales_40_8_curated, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(32471..33997)
DNA (1527bp) protein (509aa)
Tax=RBG_16_Bdellovibrionales_40_8_curated
PLM4_65_coex_sep16_scaffold_54_30
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(34123..34995)
DNA (873bp) protein (291aa)
Glycosyl transferase family 2 bin=GWA2_OP3_52_12 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
family glycosyltransferase
Tax=GWC2_Ignavibacteria_rel_36_12_curated
Displaying items 1-30 of 78 in total

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