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PLM4_65_coex_sep16_scaffold_113

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_113_1
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(3..1505)
DNA (1503bp) protein (501aa)
plastocyanin
Plastocyanin {ECO:0000313|EMBL:AIF83724.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM4_65_coex_sep16_scaffold_113_2
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(1823..2182)
DNA (360bp) protein (120aa)
fumarase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2] bin=bin3_NC10 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
fumC; fumarate hydratase, class II (EC:4.2.1.2)
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_113_3
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(2437..4833)
DNA (2397bp) protein (799aa)
spermine synthase; K00797 spermidine synthase [EC:2.5.1.16] bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_113_4
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

5246..6412
DNA (1167bp) protein (389aa)
Two-component regulator propeller domain-containing protein Tax=Azoarcus sp. KH32C RepID=H0Q119_9RHOO
two-component regulator propeller domain-containing protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_113_5
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

6414..7205
DNA (792bp) protein (264aa)
Uncharacterized conserved protein bin=GWC2_Deltaproteobacteria_55_46 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_113_6
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

7454..8272
DNA (819bp) protein (273aa)
Uncharacterized conserved protein bin=GWC2_Deltaproteobacteria_55_46 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_113_7
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(8316..8999)
DNA (684bp) protein (228aa)
Tetratricopeptide TPR_1 repeat-containing protein bin=GWC2_Nitrospirae_57_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_113_8
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(8996..11335)
DNA (2340bp) protein (780aa)
Uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_113_9
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(11501..14641)
DNA (3141bp) protein (1047aa)
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_113_10
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(14900..18007)
DNA (3108bp) protein (1036aa)
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_113_11
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18603..19247
DNA (645bp) protein (215aa)
LuxR family transcriptional regulator Tax=Streptomyces sp. FxanaC1 RepID=UPI000367446F
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIG75439.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis japonica.;"
PLM4_65_coex_sep16_scaffold_113_12
unknown

Not on your lists

19295..20101
DNA (807bp) protein (269aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_113_13
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(20431..22641)
DNA (2211bp) protein (737aa)
Peptidase M28 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BY26_NITHN
peptidase M28
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_113_14
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22667..23566)
DNA (900bp) protein (300aa)
Ribosomal protein L11 methyltransferase {ECO:0000255|HAMAP-Rule:MF_00735}; Short=L11 Mtase {ECO:0000255|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000255|HAMAP-Rule:MF_00735};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Pelotomaculum.;" source="Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI).;"
Ribosomal protein L11 methyltransferase Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=PRMA_PELTS
prmA; ribosomal protein L11 methyltransferase
PLM4_65_coex_sep16_scaffold_113_15
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(23578..24345)
DNA (768bp) protein (256aa)
Putative Daunorubicin resistance ABC transporter, membrane protein Tax=Candidatus Nitrospira defluvii RepID=D8PAN6_9BACT
putative daunorubicin resistance ABC transporter membrane protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_113_16
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(24515..25543)
DNA (1029bp) protein (343aa)
drrA; daunorubicin resistance ABC transporter ATP-binding protein (EC:3.6.3.-)
Daunorubicin resistance ABC transporter, ATP-binding protein Tax=Candidatus Nitrospira defluvii RepID=D8PAN5_9BACT
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_113_17
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

comp(25705..26004)
DNA (300bp) protein (100aa)
Putative uncharacterized protein Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NN79_ROSCS
hypothetical protein
Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
PLM4_65_coex_sep16_scaffold_113_18
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26242..27030)
DNA (789bp) protein (263aa)
Methyltransferase type 11 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12A81_POLSJ
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ABE44561.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
PLM4_65_coex_sep16_scaffold_113_19
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27132..28109)
DNA (978bp) protein (326aa)
Uncharacterized protein bin=GWB2_Desulfobacterales_56_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_coex_sep16_scaffold_113_20
unknown

Not on your lists

comp(28198..28569)
DNA (372bp) protein (124aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_113_21
Knoellia subterranea, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28656..29243)
DNA (588bp) protein (196aa)
hypothetical protein Tax=Flavobacterium rivuli RepID=UPI00035E8949
Uncharacterized protein {ECO:0000313|EMBL:KGN36558.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia subterranea KCTC 19937.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_113_22
Acinetobacter johnsonii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29248..29877)
DNA (630bp) protein (210aa)
Uncharacterized protein Tax=Acinetobacter johnsonii ANC 3681 RepID=N9CY48_ACIJO
Uncharacterized protein {ECO:0000313|EMBL:ENV73188.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter johnsonii ANC 3681.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_113_23
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(30228..30443)
DNA (216bp) protein (72aa)
Uncharacterized protein Tax=Salinibacter ruber (strain M8) RepID=D5H6E5_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23600.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain M8).;"
PLM4_65_coex_sep16_scaffold_113_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(30637..30852)
DNA (216bp) protein (72aa)
Nucleotidyltransferase domain protein bin=GWB2_Proteobacteria_55_19 species=Methanoregula formicica genus=Methanoregula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
nucleotidyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_coex_sep16_scaffold_113_25
RIFOXYD1_FULL_Bdellovibrionales_53_11_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(31102..31314)
DNA (213bp) protein (71aa)
hypothetical protein Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00037160AB
peptide ABC transporter permease
Tax=RIFOXYD1_FULL_Bdellovibrionales_53_11_curated
PLM4_65_coex_sep16_scaffold_113_26
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(31459..31758)
DNA (300bp) protein (100aa)
Putative integron gene cassette protein (Modular protein) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJA8_9BACT
integron gene cassette protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_65_coex_sep16_scaffold_113_27
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(31775..32053)
DNA (279bp) protein (93aa)
hypothetical protein Tax=Methylosinus sp. LW4 RepID=UPI000382E527
proteic killer protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM4_65_coex_sep16_scaffold_113_28
GWA2_RIF03_38_11_curated, RIF3, Bacteria

Not on your lists

comp(32135..33001)
DNA (867bp) protein (289aa)
Putative peptide transporter permease subunit: membrane component of ABC superfamily Tax=Nitrospina gracilis 3/211 RepID=M1Z1G5_9BACT
oppC; oligopeptide transport system permease OppC
Tax=GWA2_RIF03_38_11_curated
PLM4_65_coex_sep16_scaffold_113_29
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(32998..33915)
DNA (918bp) protein (306aa)
hypothetical protein Tax=Nitrospina sp. AB-629-B18 RepID=UPI0003635CE0
binding-protein-dependent transport system inner membrane protein
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
PLM4_65_coex_sep16_scaffold_113_30
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(33912..35543)
DNA (1632bp) protein (544aa)
Putative Oligopeptide-binding protein oppA Tax=Nitrospina gracilis 3/211 RepID=M1YZY1_9BACT
oligopeptide ABC transporter
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
Displaying items 1-30 of 77 in total

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