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PLM4_65_coex_sep16_scaffold_165

Search features with annotation key words

Displaying items 1-30 of 131 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_165_1
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(51..1031)
DNA (981bp) protein (327aa)
pdhB; dehydrogenase (E1) component of pyruvate dehydrogenase complex subunit beta (Transketolase) (EC:1.2.4.1)
Dehydrogenase (E1) component of pyruvate dehydrogenase complex, beta subunit (Transketolase) {ECO:0000313|EMBL:CBK43622.1}; EC=1.2.4.1 {ECO:0000313|EMBL:CBK43622.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Dehydrogenase (E1) component of pyruvate dehydrogenase complex, beta subunit (Transketolase) Tax=Candidatus Nitrospira defluvii RepID=D8P7Z0_9BACT
PLM4_65_coex_sep16_scaffold_165_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1038..1997)
DNA (960bp) protein (320aa)
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_65_coex_sep16_scaffold_165_3
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

comp(2324..4240)
DNA (1917bp) protein (639aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase Tax=Desulfotomaculum nigrificans DSM 574 RepID=F0DLZ6_9FIRM
Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
PLM4_65_coex_sep16_scaffold_165_4
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4242..5177)
DNA (936bp) protein (312aa)
Polyprenyl synthetase Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E478_GEOLS
polyprenyl synthetase
Polyprenyl synthetase {ECO:0000313|EMBL:ACD95899.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
PLM4_65_coex_sep16_scaffold_165_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(5167..5460)
DNA (294bp) protein (98aa)
xseB; exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit Tax=Candidatus Nitrospira defluvii RepID=D8P7Q2_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM4_65_coex_sep16_scaffold_165_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(5579..6997)
DNA (1419bp) protein (473aa)
ATP-dependent RNA helicase RhlB Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ANS0_PELPD
DEAD/DEAH box helicase
Tax=RBG_16_Nitrospirae_64_22_curated
PLM4_65_coex_sep16_scaffold_165_7
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7032..7844)
DNA (813bp) protein (271aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
RNA methyltransferase, TrmH family, group 1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YDF7_THIV6
RNA methyltransferase, TrmH family, group 1
PLM4_65_coex_sep16_scaffold_165_8
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists


8046..8819
DNA (774bp) protein (258aa)
30S ribosomal protein S2 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
30S ribosomal protein S2
Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
PLM4_65_coex_sep16_scaffold_165_9
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

8821..9435
DNA (615bp) protein (205aa)
elongation factor Ts Tax=Desulfurispora thermophila RepID=UPI0003653B1A
elongation factor Ts
Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
PLM4_65_coex_sep16_scaffold_165_10
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

9527..10258
DNA (732bp) protein (244aa)
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
PLM4_65_coex_sep16_scaffold_165_11
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

10305..10856
DNA (552bp) protein (184aa)
Ribosome-recycling factor Tax=Candidatus Nitrospira defluvii RepID=D8PGS9_9BACT
frr; ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM4_65_coex_sep16_scaffold_165_12
CG_Delta_04, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10938..11357
DNA (420bp) protein (140aa)
Putative uncharacterized protein bin=GWB2_Nitrospirae_rel_47_37 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=CG_Delta_04
PLM4_65_coex_sep16_scaffold_165_13
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

11386..12087
DNA (702bp) protein (234aa)
Putative uncharacterized protein bin=GWC2_Deltaproteobacteria_56_8 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
putative peptidase, C39 family
Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
PLM4_65_coex_sep16_scaffold_165_14
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

12084..13232
DNA (1149bp) protein (383aa)
Tetratricopeptide TPR_2 repeat-containing protein Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3Z0H6_DESAF
hypothetical protein
Tax=GWC2_Nitrospirae_57_9_curated
PLM4_65_coex_sep16_scaffold_165_15
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

13229..14392
DNA (1164bp) protein (388aa)
alanine racemase (EC:5.1.1.1)
Alanine racemase bin=GWC2_Nitrospirae_57_13 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Tax=GWC2_Nitrospirae_57_13_curated
PLM4_65_coex_sep16_scaffold_165_16
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14389..15171
DNA (783bp) protein (261aa)
Putative integral membrane protein bin=GWF2_Nitrospirae_44_13 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=CG_Delta_01
PLM4_65_coex_sep16_scaffold_165_17
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

15177..15923
DNA (747bp) protein (249aa)
Ribonucleotide ABC transporter ATP-binding protein bin=GWC2_Nitrospirae_57_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
ABC transporter
Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
PLM4_65_coex_sep16_scaffold_165_18
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

15933..17369
DNA (1437bp) protein (479aa)
Mammalian cell entry related domain protein bin=GWD2_Nitrospirae-related_57_8 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
organic solvents resistance ABC transporter periplasmic protein
Tax=RBG_16_Nitrospirae_64_22_curated
PLM4_65_coex_sep16_scaffold_165_19
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

17548..18384
DNA (837bp) protein (279aa)
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_65_coex_sep16_scaffold_165_20
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

18710..19990
DNA (1281bp) protein (427aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase Tax=Candidatus Nitrospira defluvii RepID=D8PAF8_9BACT
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM4_65_coex_sep16_scaffold_165_21
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(20473..20949)
DNA (477bp) protein (159aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P9X0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK40029.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM4_65_coex_sep16_scaffold_165_22
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(21020..21493)
DNA (474bp) protein (158aa)
Putative copper resistance protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I8X2_NITGG
Copper resistance protein CopD
Copper resistance protein CopD {ECO:0000313|EMBL:AIC15548.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM4_65_coex_sep16_scaffold_165_23
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

21640..23475
DNA (1836bp) protein (612aa)
UvrABC system protein C Tax=Candidatus Nitrospira defluvii RepID=D8PAV9_9BACT
uvrC; excinuclease ABC subunit C
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM4_65_coex_sep16_scaffold_165_24
unknown

Not on your lists

comp(23478..24440)
DNA (963bp) protein (321aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_165_25
unknown

Not on your lists

comp(24524..24883)
DNA (360bp) protein (120aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_165_26
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24898..25962
DNA (1065bp) protein (355aa)
Chaperone protein DnaJ Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DNL4_DESRL
chaperone DnaJ domain-containing protein
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 /; DL).;"
PLM4_65_coex_sep16_scaffold_165_27
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

26042..28036
DNA (1995bp) protein (665aa)
ABC transporter ATP-binding protein with duplicated ATPase domains (EC:3.6.3.-)
Putative ABC transporter, ATP-binding protein with duplicated ATPase domains Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML46_9BACT
Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
PLM4_65_coex_sep16_scaffold_165_28
unknown

Not on your lists

comp(28055..28501)
DNA (447bp) protein (149aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_165_29
unknown

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28557..29090
DNA (534bp) protein (178aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_165_30
unknown

Not on your lists

comp(29244..29474)
DNA (231bp) protein (77aa)

This feature has no annotations

Displaying items 1-30 of 131 in total

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