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PLM4_65_coex_sep16_scaffold_814

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_814_1
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(2..1291)
DNA (1290bp) protein (430aa)
purB; adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172, ECO:0000313|EMBL:CBE67658.1};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Adenylosuccinate lyase (Adenylosuccinase) (ASL) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKL1_9BACT
PLM4_65_coex_sep16_scaffold_814_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(1432..2685)
DNA (1254bp) protein (418aa)
Putative enzyme {ECO:0000313|EMBL:CBE67657.1}; EC=3.4.24.- {ECO:0000313|EMBL:CBE67657.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Putative enzyme Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKL0_9BACT
ymxG; hypothetical protein
PLM4_65_coex_sep16_scaffold_814_3
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(2689..4800)
DNA (2112bp) protein (704aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595, ECO:0000313|EMBL:CBE67656.1};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Polyribonucleotide nucleotidyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK9_9BACT
PLM4_65_coex_sep16_scaffold_814_4
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(4937..5845)
DNA (909bp) protein (303aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Riboflavin biosynthesis protein RibF Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK7_9BACT
riboflavin biosynthesis protein RibF
PLM4_65_coex_sep16_scaffold_814_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(5842..6783)
DNA (942bp) protein (314aa)
truB; tRNA pseudouridine synthase B (EC:5.4.99.-)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
tRNA pseudouridine synthase B Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK6_9BACT
PLM4_65_coex_sep16_scaffold_814_6
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(6798..7670)
DNA (873bp) protein (291aa)
PHP C-terminal domain protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK5_9BACT
phP C-terminal domain-containing protein
PHP C-terminal domain protein {ECO:0000313|EMBL:CBE67652.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(7673..8035)
DNA (363bp) protein (121aa)
Ribosome-binding factor A Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK4_9BACT
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(8081..8368)
DNA (288bp) protein (96aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK3_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67650.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_9
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(8444..10852)
DNA (2409bp) protein (803aa)
Translation initiation factor IF-2 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK2_9BACT
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(10865..11509)
DNA (645bp) protein (215aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK1_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67648.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(11510..12820)
DNA (1311bp) protein (437aa)
Transcription elongation protein nusA (N utilization substance protein A) (L factor) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKK0_9BACT
nusA; transcription elongation protein nusA (N utilization substance protein A) (L factor)
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(12907..13368)
DNA (462bp) protein (154aa)
Ribosome maturation factor RimP Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKJ8_9BACT
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_13
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(13487..15571)
DNA (2085bp) protein (695aa)
Elongation factor G (EF-G) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKJ7_9BACT
fusA; elongation factor G
Elongation factor G (EF-G) {ECO:0000313|EMBL:CBE67644.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_14
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


comp(15750..16229)
DNA (480bp) protein (160aa)
50S ribosomal protein L17 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKJ6_9BACT
50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_15
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(16253..17269)
DNA (1017bp) protein (339aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059, ECO:0000313|EMBL:CBE67642.1};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
DNA-directed RNA polymerase subunit alpha Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKJ5_9BACT
PLM4_65_coex_sep16_scaffold_814_16
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


comp(17291..17947)
DNA (657bp) protein (219aa)
30S ribosomal protein S4 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKJ4_9BACT
rpsD; 30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_17
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


comp(18032..18448)
DNA (417bp) protein (139aa)
30S ribosomal protein S11 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKJ3_9BACT
rpsK; 30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_18
Desulfosporosinus youngiae, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18564..18938)
DNA (375bp) protein (125aa)
30S ribosomal protein S13 Tax=Desulfurispora thermophila RepID=UPI000373E5B3
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus youngiae DSM 17734.;"
PLM4_65_coex_sep16_scaffold_814_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(19199..19417)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKJ1_9BACT
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075, ECO:0000313|EMBL:CBE67638.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(19438..20196)
DNA (759bp) protein (253aa)
map; methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974, ECO:0000313|EMBL:CBE67637.1}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974, ECO:0000313|EMBL:CBE67637.1};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Methionine aminopeptidase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKJ0_9BACT
PLM4_65_coex_sep16_scaffold_814_21
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(20212..20853)
DNA (642bp) protein (214aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Adenylate kinase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKI9_9BACT
PLM4_65_coex_sep16_scaffold_814_22
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


comp(20860..22170)
DNA (1311bp) protein (437aa)
Protein translocase subunit SecY Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKI8_9BACT
secY; preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_23
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


comp(22167..22613)
DNA (447bp) protein (149aa)
50S ribosomal protein L15 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKI7_9BACT
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_24
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


comp(22610..22810)
DNA (201bp) protein (67aa)
50S ribosomal subunit protein L30 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKI6_9BACT
rpmD; 50S ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|SAAS:SAAS00032272}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_25
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


comp(22812..23321)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI0003637AFD
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_26
unknown

Not on your lists

comp(23318..23434)
DNA (117bp) protein (39aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_814_27
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


comp(23434..23802)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00035C209D
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_28
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


comp(23830..24366)
DNA (537bp) protein (179aa)
50S ribosomal protein L6 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKI3_9BACT
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_29
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


comp(24456..24851)
DNA (396bp) protein (132aa)
30S ribosomal protein S8 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKI2_9BACT
rpsH; 30S ribosomal protein S8, and regulator
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_814_30
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


comp(25366..25779)
DNA (414bp) protein (138aa)
50S ribosomal protein L5 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKI0_9BACT
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Displaying 30 items

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