ggKbase home page

PLM4_65_coex_sep16_scaffold_2588

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2588_1
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

1..177
DNA (177bp) protein (59aa)
alr; alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
hypothetical protein, partial Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036CD597
PLM4_65_coex_sep16_scaffold_2588_trna_1
unknown

Not on your lists

336..421
DNA (86bp)
transferRNA Leu
PLM4_65_coex_sep16_scaffold_2588_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

454..1755
DNA (1302bp) protein (434aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00037000C2
Trigger factor (TF)
PLM4_65_coex_sep16_scaffold_2588_3
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

1773..2402
DNA (630bp) protein (210aa)
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000313|EMBL:CBE69229.1};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
ATP-dependent Clp protease proteolytic subunit Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHT8_9BACT
PLM4_65_coex_sep16_scaffold_2588_4
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

2574..3821
DNA (1248bp) protein (416aa)
clpX; ATP-dependent Clp protease ATP-binding subunit clpX (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpX Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHU0_9BACT
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_2588_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

3955..4863
DNA (909bp) protein (303aa)
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00037C0337
Tetratricopeptide TPR_2
Putative Tetratricopeptide TPR_2 {ECO:0000313|EMBL:CBE69232.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_2588_6
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists


4905..5873
DNA (969bp) protein (323aa)
ksgA; dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036FFF88
PLM4_65_coex_sep16_scaffold_2588_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

5870..6910
DNA (1041bp) protein (347aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128, ECO:0000313|EMBL:CBE69234.1}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000371EF9B
thiamine-monophosphate kinase
PLM4_65_coex_sep16_scaffold_2588_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

6991..7377
DNA (387bp) protein (129aa)
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00037D1F38
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69235.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_2588_9
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(7710..9134)
DNA (1425bp) protein (475aa)
pyk; pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase Tax=Cystobacter fuscus DSM 2262 RepID=S9R8C3_9DELT
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_2588_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(9154..10437)
DNA (1284bp) protein (428aa)
eno; enolase (EC:4.2.1.11)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318, ECO:0000313|EMBL:CBE69236.1};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Enolase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHU5_9BACT
PLM4_65_coex_sep16_scaffold_2588_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(10434..11066)
DNA (633bp) protein (211aa)
gdh; glutamate dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHU6_9BACT
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_2588_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(11132..11527)
DNA (396bp) protein (132aa)
gdh; glutamate dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHU6_9BACT
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_2588_13
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12068..13399
DNA (1332bp) protein (444aa)
hypothetical protein bin=bin5_DeltaP species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
TPR repeat-containing protein
Tax=CSP1_8_Deltaproteobacteria
Displaying 14 items

View Taxonomy