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PLM4_65_coex_sep16_scaffold_9818

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_9818_1
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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1..321
DNA (321bp) protein (107aa)
Iron-binding protein IscA (Iron-sulfur cluster assembly protein) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFY5_9BACT
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein)
Iron-binding protein IscA (Iron-sulfur cluster assembly protein) {ECO:0000313|EMBL:CBE68666.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_9818_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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336..875
DNA (540bp) protein (180aa)
nqo; NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain 6) (NDH-1 subunit 6) (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; EC=1.6.99.5 {ECO:0000313|EMBL:CBE68665.1};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
NADH-quinone oxidoreductase subunit B Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFY4_9BACT
PLM4_65_coex_sep16_scaffold_9818_3
Leptospirillum ferrooxidans, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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998..1147
DNA (150bp) protein (50aa)
Thiolspecific antioxidant protein Tax=Leptospirillum ferrooxidans (strain C2-3) RepID=I0IQC8_LEPFC
thiolspecific antioxidant protein
Thiolspecific antioxidant protein {ECO:0000313|EMBL:BAM07477.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferrooxidans (strain C2-3).;"
PLM4_65_coex_sep16_scaffold_9818_4
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

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1178..1468
DNA (291bp) protein (97aa)
Putative alkyl hydroperoxide reductase bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
putative alkyl hydroperoxide reductase
Tax=GWB2_Chloroflexi_54_36_curated
PLM4_65_coex_sep16_scaffold_9818_5
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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1591..2001
DNA (411bp) protein (137aa)
D-proline reductase (Dithiol) {ECO:0000313|EMBL:EFH88373.1}; EC=1.21.4.1 {ECO:0000313|EMBL:EFH88373.1};; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
D-proline reductase (EC:1.21.4.1)
D-proline reductase (Dithiol) Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TE00_9CHLR
PLM4_65_coex_sep16_scaffold_9818_6
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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2047..2277
DNA (231bp) protein (77aa)
Putative uncharacterized protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H9K9_ANADF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS25405.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PLM4_65_coex_sep16_scaffold_9818_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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2289..2822
DNA (534bp) protein (178aa)
nuoI; NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I) (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; EC=1.6.99.5 {ECO:0000313|EMBL:CBE68664.1};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
NADH-quinone oxidoreductase subunit I Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFY3_9BACT
PLM4_65_coex_sep16_scaffold_9818_8
CSP1_5_NC10, NC10, Bacteria

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2870..3205
DNA (336bp) protein (112aa)
cupin domain-containing protein bin=bin3_NC10 species=Myxococcus xanthus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
cupin 2 barrel domain-containing protein
Tax=CSP1_5_NC10
PLM4_65_coex_sep16_scaffold_9818_9
unknown

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3233..3397
DNA (165bp) protein (55aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_9818_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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3405..4187
DNA (783bp) protein (261aa)
Putative formate dehydrogenase family accessory protein (FdhD) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFY0_9BACT
formate dehydrogenase family accessory protein (FdhD)
Protein FdhD homolog {ECO:0000256|SAAS:SAAS00093832}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_9818_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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4184..5047
DNA (864bp) protein (288aa)
PHP-like Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFX9_9BACT
phP-like protein
PHP-like {ECO:0000313|EMBL:CBE68660.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_9818_12
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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5103..5495
DNA (393bp) protein (131aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM4_65_coex_sep16_scaffold_9818_13
CSP1_5_NC10, NC10, Bacteria

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comp(5576..5812)
DNA (237bp) protein (79aa)
id=14430183 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
PLM4_65_coex_sep16_scaffold_9818_14
CSP1_5_NC10, NC10, Bacteria

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comp(5881..6528)
DNA (648bp) protein (216aa)
thiamine biosynthesis protein ThiF; K03148 sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] bin=bin3_NC10 species=Dehalobacter sp. FTH1 genus=Dehalobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
ThiF
Tax=CSP1_5_NC10
PLM4_65_coex_sep16_scaffold_9818_15
CSP1_5_NC10, NC10, Bacteria

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comp(6541..7716)
DNA (1176bp) protein (392aa)
id=14430181 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
PLM4_65_coex_sep16_scaffold_9818_16
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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7921..8853
DNA (933bp) protein (311aa)
lipA; Lipoyl synthase (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) (EC:2.8.1.-)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Lipoyl synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFX8_9BACT
PLM4_65_coex_sep16_scaffold_9818_17
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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8898..10307
DNA (1410bp) protein (470aa)
lpD; dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692, ECO:0000313|EMBL:CBE68655.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Dihydrolipoyl dehydrogenase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFX4_9BACT
PLM4_65_coex_sep16_scaffold_9818_18
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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10476..11138
DNA (663bp) protein (221aa)
lipB; lipoate biosynthesis protein B; Lipoate-protein ligase B (EC:2.3.1.-)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Octanoyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFX3_9BACT
PLM4_65_coex_sep16_scaffold_9818_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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11375..12385
DNA (1011bp) protein (337aa)
Response regulator receiver modulated metal dependent phosphohydrolase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFX2_9BACT
hypothetical protein
Response regulator receiver modulated metal dependent phosphohydrolase {ECO:0000313|EMBL:CBE68653.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_9818_20
R_NC10_66_22, NC10, Bacteria

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12532..13044
DNA (513bp) protein (171aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin3_NC10 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_9818_21
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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13038..13793
DNA (756bp) protein (252aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFX1_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68652.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_9818_22
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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13790..14467
DNA (678bp) protein (226aa)
Heme exporter, protein B Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFX0_9BACT
Heme exporter, protein B
Heme exporter, protein B {ECO:0000313|EMBL:CBE68651.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_9818_23
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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14502..15185
DNA (684bp) protein (228aa)
Heme ABC transporter (Heme exporter protein C), permease protein (Cytochrome c biogenesis) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFW9_9BACT
ccmC; heme ABC transporter (heme exporter protein C), permease protein (cytochrome c biogenesis)
Heme ABC transporter (Heme exporter protein C), permease protein (Cytochrome c biogenesis) {ECO:0000313|EMBL:CBE68650.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_9818_24
unknown

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15146..15328
DNA (183bp) protein (61aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_9818_25
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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15325..15777
DNA (453bp) protein (151aa)
Cytochrome c-type biogenesis protein ccmE (Cytochrome c maturation protein E) (Heme chaperone ccmE) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFW8_9BACT
ccmE; cytochrome c-type biogenesis protein CcmE
Cytochrome c-type biogenesis protein ccmE (Cytochrome c maturation protein E) (Heme chaperone ccmE) {ECO:0000313|EMBL:CBE68649.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_coex_sep16_scaffold_9818_26
unknown

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15774..15851
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 26 items

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