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PLM4_65_coex_sep16_scaffold_1270

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_1270_1
RBG_13_Chloroflexi_48_10_curated, Chloroflexi, Bacteria

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comp(1..1260)
DNA (1260bp) protein (420aa)
Glycoside hydrolase family protein Tax=Clostridium termitidis CT1112 RepID=S0FTD1_9CLOT
glycoside hydrolase family 4
Tax=RBG_13_Chloroflexi_48_10_curated
PLM4_65_coex_sep16_scaffold_1270_2
RBG_13_Chloroflexi_48_10_curated, Chloroflexi, Bacteria

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comp(1436..3079)
DNA (1644bp) protein (548aa)
Extracellular solute-binding protein family 1 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
family 1 extracellular solute-binding protein
Tax=RBG_13_Chloroflexi_48_10_curated
PLM4_65_coex_sep16_scaffold_1270_3
RBG_13_Chloroflexi_48_10_curated, Chloroflexi, Bacteria

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comp(3175..4053)
DNA (879bp) protein (293aa)
ABC-type transporter, integral membrane subunit bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
binding-protein-dependent transport system inner membrane protein
Tax=RBG_13_Chloroflexi_48_10_curated
PLM4_65_coex_sep16_scaffold_1270_4
RBG_13_Chloroflexi_48_10_curated, Chloroflexi, Bacteria

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comp(4064..5026)
DNA (963bp) protein (321aa)
Binding-protein-dependent transport system inner membrane protein Tax=Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) RepID=D3PLU8_MEIRD
binding-protein-dependent transport system inner membrane protein
Tax=RBG_13_Chloroflexi_48_10_curated
PLM4_65_coex_sep16_scaffold_1270_5
RBG_13_Chloroflexi_48_10_curated, Chloroflexi, Bacteria

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5324..9055
DNA (3732bp) protein (1244aa)
Putative two-component hybrid sensor and regulator bin=GWB1_Spirochaetes_59_5 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
two-component hybrid sensor and regulator
Tax=RBG_13_Chloroflexi_48_10_curated
PLM4_65_coex_sep16_scaffold_1270_6
Ewingella americana, Ewingella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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9275..9943
DNA (669bp) protein (223aa)
3-keto-L-gulonate-6-phosphate decarboxylase {ECO:0000313|EMBL:KFC78885.1}; EC=4.1.1.23 {ECO:0000313|EMBL:KFC78885.1};; EC=4.1.1.85 {ECO:0000313|EMBL:KFC78885.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Ewingella.;" source="Ewingella americana ATCC 33852.;"
ulaD; 3-keto-L-gulonate-6-phosphate decarboxylase UlaD (EC:4.1.1.85)
3-dehydro-L-gulonate-6-phosphate decarboxylase bin=GWF2_Syntrophobacterales_56_9 species=Brenneria sp. EniD312 genus=Brenneria taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
PLM4_65_coex_sep16_scaffold_1270_7
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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10080..10829
DNA (750bp) protein (250aa)
Oxidoreductase bin=GWB1_Spirochaetes_59_5 species=Lactobacillus kisonensis genus=Lactobacillus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
yusZ3; oxidoreductase
Tax=RBG_16_Spirochaete_67_19_curated
PLM4_65_coex_sep16_scaffold_1270_8
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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11090..11845
DNA (756bp) protein (252aa)
Ribose ABC transporter, periplasmic ribose-binding protein Tax=Vibrio shilonii AK1 RepID=A6CYT4_9VIBR
ribose ABC transporter substrate-binding protein
Tax=RBG_16_Spirochaete_67_19_curated
PLM4_65_coex_sep16_scaffold_1270_9
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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11842..12120
DNA (279bp) protein (93aa)
ABC-type sugar transporter periplasmic component-like protein Tax=Osedax symbiont Rs2 RepID=S6GLL1_9GAMM
ribose ABC transporter substrate-binding protein
Tax=RBG_16_Spirochaete_67_19_curated
PLM4_65_coex_sep16_scaffold_1270_10
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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12199..13689
DNA (1491bp) protein (497aa)
ABC transporter-like protein Tax=Osedax symbiont Rs2 RepID=S6GRM4_9GAMM
ABC transporter
Tax=RBG_16_Spirochaete_67_19_curated
PLM4_65_coex_sep16_scaffold_1270_11
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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13692..14723
DNA (1032bp) protein (344aa)
Putative sugar ABC transporter, permease protein Tax=Osedax symbiont Rs2 RepID=S6HMC0_9GAMM
sugar ABC transporter permease
Tax=RBG_16_Spirochaete_67_19_curated
PLM4_65_coex_sep16_scaffold_1270_12
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

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14767..15804
DNA (1038bp) protein (346aa)
Ribose ABC transporter permease protein Tax=Osedax symbiont Rs2 RepID=S6HXR6_9GAMM
ribose ABC transporter permease
Tax=GWC1_Treponema_61_84_curated
PLM4_65_coex_sep16_scaffold_1270_13
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

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15829..16716
DNA (888bp) protein (296aa)
Putative hexulose-6-phosphate isomerase bin=GWC2_Chloroflexi_49_37 species=Yokenella regensburgei genus=Yokenella taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
xylulose 5-phosphate 3-epimerase
Tax=GWC2_Chloroflexi_49_37_curated
PLM4_65_coex_sep16_scaffold_1270_14
Sodalis praecaptivus, Sodalis, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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16888..17862
DNA (975bp) protein (325aa)
DeoR family transcriptional regulator Tax=Osedax symbiont Rs2 RepID=S6GMT0_9GAMM
Transcriptional regulator, DeoR family
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:AHF78710.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis.;" source="Sodalis praecaptivus.;"
PLM4_65_coex_sep16_scaffold_1270_15
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

17880..18551
DNA (672bp) protein (224aa)
L-ribulose-5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose-5-phosphate 4-epimerase bin=GWC2_Chloroflexi_49_37 species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
Tax=GWC2_Chloroflexi_49_37_curated
PLM4_65_coex_sep16_scaffold_1270_16
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

18553..19575
DNA (1023bp) protein (341aa)
pyruvate dehydrogenase (EC:1.2.4.1)
Pyruvate dehydrogenase (Acetyl-transferring) bin=GWD2_Chloroflexi_49_16 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
Tax=GWC2_Chloroflexi_49_37_curated
PLM4_65_coex_sep16_scaffold_1270_17
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

19572..20573
DNA (1002bp) protein (334aa)
Acetoin dehydrogenase E1 component beta subunit bin=GWD2_Chloroflexi_49_16 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
acoB; acetoin dehydrogenase E1 subunit beta
Tax=GWC2_Chloroflexi_49_37_curated
PLM4_65_coex_sep16_scaffold_1270_18
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

20576..21868
DNA (1293bp) protein (431aa)
acoC; branched-chain alpha-keto acid dehydrogenase subunit E2 (EC:2.3.1.12)
Dihydrolipoamide acetyltransferase bin=GWB2_Chloroflexi_49_20 species=Bacillus sp. M 2-6 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
Tax=GWC2_Chloroflexi_49_37_curated
PLM4_65_coex_sep16_scaffold_1270_19
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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21920..22705
DNA (786bp) protein (262aa)
HAD-superfamily hydrolase, subfamily IIA Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7Q2_SPHTD
HAD-superfamily hydrolase
HAD-superfamily hydrolase, subfamily IIA {ECO:0000313|EMBL:ACZ37885.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM4_65_coex_sep16_scaffold_1270_20
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

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22770..24317
DNA (1548bp) protein (516aa)
Possible carbohydrate kinase FGGY bin=GWC2_Chloroflexi_49_37 species=Selenomonas sp. oral taxon 149 genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
putative sugar kinase
Tax=RBG_16_Planctomycetes_64_12_curated
PLM4_65_coex_sep16_scaffold_1270_21
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

Not on your lists

24335..25213
DNA (879bp) protein (293aa)
UPI0003CF8430 related cluster Tax=unknown RepID=UPI0003CF8430
Transcriptional regulator, IclR family/regucalcin
Tax=GWC1_Treponema_61_84_curated
PLM4_65_coex_sep16_scaffold_1270_22
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

25235..26101
DNA (867bp) protein (289aa)
fructose-1,6-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:ABC20686.1}; EC=4.1.2.13 {ECO:0000313|EMBL:ABC20686.1};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella thermoacetica (strain ATCC 39073).;"
Fructose-bisphosphate aldolase Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RFV3_MOOTA
PLM4_65_coex_sep16_scaffold_1270_23
Brevibacillus sp. CF112, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26123..27646
DNA (1524bp) protein (508aa)
Pentulose/hexulose kinase Tax=Brevibacillus sp. CF112 RepID=J2HYW8_9BACL
Pentulose/hexulose kinase {ECO:0000313|EMBL:EJL41328.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus sp. CF112.;"
glycerol kinase
PLM4_65_coex_sep16_scaffold_1270_24

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27675..28202
DNA (528bp) protein (176aa)
Putative uncharacterized protein Tax=Clostridium sp. D5 RepID=F0YTU2_9CLOT bin=RBG9 species=Clostridium sp. D5 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG9 organism_group=Chloroflexi
Marine sediment metagenome DNA, contig: S01H1_S02860 {ECO:0000313|EMBL:GAF86455.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying 24 items

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