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PLM4_65_coex_sep16_scaffold_2452

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2452_1
R_OD1_Yanofskybacteria_41_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

359..871
DNA (513bp) protein (171aa)
RNA polymerase sigma factor, sigma-70 family bin=GWC1_OP11_49_16_COMPLETE species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
ECF subfamily RNA polymerase sigma-70 factor
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_11_curated
PLM4_65_coex_sep16_scaffold_2452_2
R_OD1_58_14, Parcubacteria, Bacteria

Not on your lists

868..1224
DNA (357bp) protein (119aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_58_14_curated
PLM4_65_coex_sep16_scaffold_2452_trna_6
unknown

Not on your lists

comp(1261..1331)
DNA (71bp)
transferRNA Pro
PLM4_65_coex_sep16_scaffold_2452_3
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(1336..2853)
DNA (1518bp) protein (506aa)
Putative domain HDIG-containing protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
polynucleotide adenylyltransferase/metal dependent phosphohydrolase
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM4_65_coex_sep16_scaffold_2452_4
unknown

Not on your lists

3176..3397
DNA (222bp) protein (74aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2452_5
Formosa sp. AK20, Formosa, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3401..3973)
DNA (573bp) protein (191aa)
Uncharacterized protein Tax=Formosa sp. AK20 RepID=M7MY24_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EMQ94379.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Formosa.;" source="Formosa sp. AK20.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_2452_trna_5
unknown

Not on your lists

comp(4138..4209)
DNA (72bp)
transferRNA Arg
PLM4_65_coex_sep16_scaffold_2452_trna_1
unknown

Not on your lists

4346..4416
DNA (71bp)
transferRNA Ala
PLM4_65_coex_sep16_scaffold_2452_6
R_OD1_Yanofskybacteria_49_17, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

4658..5380
DNA (723bp) protein (241aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00036E9BCA
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_49_17_curated
PLM4_65_coex_sep16_scaffold_2452_trna_2
unknown

Not on your lists

5423..5509
DNA (87bp)
transferRNA Ser
PLM4_65_coex_sep16_scaffold_2452_trna_3
unknown

Not on your lists

5521..5604
DNA (84bp)
transferRNA Ser
PLM4_65_coex_sep16_scaffold_2452_7
GWC1_OD1_43_30, Parcubacteria, Bacteria

Not on your lists

5615..5884
DNA (270bp) protein (90aa)
Uncharacterized protein Tax=Geobacillus RepID=L7ZWB3_9BACI
Uncharacterized protein {ECO:0000313|EMBL:KKT14131.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_43_30.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_2452_8
R_OD1_Yanofskybacteria_41_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

5888..6421
DNA (534bp) protein (178aa)
transmembrane_regions 57..74 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_11_curated
PLM4_65_coex_sep16_scaffold_2452_trna_4
unknown

Not on your lists

comp(6492..6563)
DNA (72bp)
transferRNA Arg
PLM4_65_coex_sep16_scaffold_2452_9
unknown

Not on your lists

comp(6724..6813)
DNA (90bp) protein (30aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2452_10
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

6849..7793
DNA (945bp) protein (315aa)
Uncharacterized protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
cell surface protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
PLM4_65_coex_sep16_scaffold_2452_11
R_OD1_Yanofskybacteria_39_10, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

7824..8705
DNA (882bp) protein (294aa)
hypothetical protein bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_39_10_curated
PLM4_65_coex_sep16_scaffold_2452_12
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

8711..9370
DNA (660bp) protein (220aa)
sortase family protein bin=GWB1_KAZAN_52_7 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWB1_KAZAN_52_7 organism_group=Kazan
sortase family protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
PLM4_65_coex_sep16_scaffold_2452_13
Parcubacteria bacterium GW2011_GWB1_56_8, Parcubacteria, Bacteria

Not on your lists

9490..10266
DNA (777bp) protein (259aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW45053.1}; Flags: Fragment;; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_56_8.;"
PLM4_65_coex_sep16_scaffold_2452_14
R_OD1_Yanofskybacteria_45_18, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

10727..11734
DNA (1008bp) protein (336aa)
Autotransporter adhesin Tax=Paenibacillus polymyxa CR1 RepID=V5X0Z8_PAEPO
autotransporter adhesin
Tax=RIFCSPLOWO2_02_FULL_OD1_Yanofskybacteria_45_18_curated
PLM4_65_coex_sep16_scaffold_2452_15
GWA1_OD1_39_13_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

11811..13847
DNA (2037bp) protein (679aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase {ECO:0000313|EMBL:KKR02667.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA1_39_13.;"
ATP-dependent DNA helicase RecG bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
PLM4_65_coex_sep16_scaffold_2452_16
R_OD1_Yanofskybacteria_41_21, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(13765..15414)
DNA (1650bp) protein (550aa)
hypothetical protein cdiviTM7_00321 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_41_21_curated
PLM4_65_coex_sep16_scaffold_2452_17
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(15576..16538)
DNA (963bp) protein (321aa)
Polymerase III, delta subunit protein {ECO:0000313|EMBL:KKT82483.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
DNA polymerase III, delta subunit bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
DNA polymerase III subunit delta
PLM4_65_coex_sep16_scaffold_2452_18
R_OD1_Yanofskybacteria_48_25b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(16535..17563)
DNA (1029bp) protein (343aa)
PT repeat-containing protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_48_25b_curated
PLM4_65_coex_sep16_scaffold_2452_19
R_OD1_Yanofskybacteria_44_88, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(17560..18441)
DNA (882bp) protein (294aa)
Formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_44_88_curated
PLM4_65_coex_sep16_scaffold_2452_20
R_OD1_Yanofskybacteria_45_18, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(18514..21090)
DNA (2577bp) protein (859aa)
polA; DNA polymerase I (EC:2.7.7.7)
DNA polymerase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPLOWO2_02_FULL_OD1_Yanofskybacteria_45_18_curated
PLM4_65_coex_sep16_scaffold_2452_21
R_OD1_Yanofskybacteria_42_49, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(21087..21518)
DNA (432bp) protein (144aa)
Uncharacterized protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Nucleotide-binding protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_42_49_curated
PLM4_65_coex_sep16_scaffold_2452_22
unknown

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comp(21633..22652)
DNA (1020bp) protein (340aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2452_23
unknown

Not on your lists

comp(22609..23187)
DNA (579bp) protein (193aa)

This feature has no annotations

Displaying 29 items

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