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PLM4_65_coex_sep16_scaffold_2541

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2541_1

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2..724
DNA (723bp) protein (241aa)
Type II secretion system protein E {ECO:0000313|EMBL:KKU93467.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_48_11b.;"
Type IV-A pilus assembly ATPase PilB bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
type II secretion system protein E
PLM4_65_coex_sep16_scaffold_2541_2
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

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728..1792
DNA (1065bp) protein (355aa)
twitching motility protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
pilT; twitching motility protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM4_65_coex_sep16_scaffold_2541_3
GWC2_OD1_41_9, Yanofskybacteria, Parcubacteria, Bacteria

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1794..3002
DNA (1209bp) protein (403aa)
Type IV pilus inner membrane protein PilC {ECO:0000313|EMBL:KKS26828.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWC2_41_9.;"
Type IV pilus inner membrane protein PilC bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
pilin biogenesis protein
PLM4_65_coex_sep16_scaffold_2541_4
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

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3057..3311
DNA (255bp) protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT82505.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
Putative uncharacterized protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
PLM4_65_coex_sep16_scaffold_2541_5
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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3338..3625
DNA (288bp) protein (96aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
PLM4_65_coex_sep16_scaffold_2541_6
R_OD1_Yanofskybacteria_41_11, Yanofskybacteria, Parcubacteria, Bacteria

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3715..4452
DNA (738bp) protein (246aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme PilD bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
PppA; Signal peptidase, cleaves prepilin-like proteins
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_11_curated
PLM4_65_coex_sep16_scaffold_2541_7
GWA1_OD1_39_13_partial, Yanofskybacteria, Parcubacteria, Bacteria

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4418..4831
DNA (414bp) protein (138aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR02624.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA1_39_13.;"
PLM4_65_coex_sep16_scaffold_2541_8
R_OD1_Yanofskybacteria_47_9b, Yanofskybacteria, Parcubacteria, Bacteria

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4833..5474
DNA (642bp) protein (214aa)
id=1968404 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPLOWO2_02_FULL_OD1_Yanofskybacteria_47_9b_curated
PLM4_65_coex_sep16_scaffold_2541_9

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5455..5982
DNA (528bp) protein (176aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU92566.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_48_11b.;"
id=1968403 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
PLM4_65_coex_sep16_scaffold_2541_10
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

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5969..6532
DNA (564bp) protein (188aa)
Type IV pilus assembly protein PilW bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
PLM4_65_coex_sep16_scaffold_2541_11
GWF2_OD1_43_596, Yanofskybacteria, Parcubacteria, Bacteria

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6534..6908
DNA (375bp) protein (125aa)
id=1968401 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Uncharacterized protein {ECO:0000313|EMBL:KKT15778.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWF2_43_596.;"
PLM4_65_coex_sep16_scaffold_2541_12
R_OD1_Yanofskybacteria_43_32, Yanofskybacteria, Parcubacteria, Bacteria

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6933..8921
DNA (1989bp) protein (663aa)
NAD-dependent DNA ligase (EC:6.5.1.2)
DNA ligase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_32_curated
PLM4_65_coex_sep16_scaffold_2541_13
unknown

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8935..9147
DNA (213bp) protein (71aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2541_14
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

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9362..9664
DNA (303bp) protein (101aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
protein GatC
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
PLM4_65_coex_sep16_scaffold_2541_15
R_OD1_Yanofskybacteria_45_18, Yanofskybacteria, Parcubacteria, Bacteria

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9661..11082
DNA (1422bp) protein (474aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A
Tax=RIFCSPLOWO2_02_FULL_OD1_Yanofskybacteria_45_18_curated
PLM4_65_coex_sep16_scaffold_2541_16
GWA1_OD1_41_6_very_partial, Yanofskybacteria, Parcubacteria, Bacteria

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11154..11663
DNA (510bp) protein (170aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS12937.1}; Flags: Fragment;; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA1_41_6.;"
Putative uncharacterized protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
PLM4_65_coex_sep16_scaffold_2541_17
R_RIF_OD1_05_43_15b, RIF-OD1-5, Parcubacteria, Bacteria

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11667..13433
DNA (1767bp) protein (589aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B36C6F
VanW family protein
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_05_43_15b_curated
PLM4_65_coex_sep16_scaffold_2541_18
RBG_16_OD1_47_10_curated, Parcubacteria, Bacteria

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comp(13497..14198)
DNA (702bp) protein (234aa)
Putative uncharacterized protein bin=GWC1_OD1_38_17 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Tax=RBG_16_OD1_47_10_curated
PLM4_65_coex_sep16_scaffold_2541_19
R_OD1_Yanofskybacteria_45_18, Yanofskybacteria, Parcubacteria, Bacteria

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14297..14797
DNA (501bp) protein (167aa)
id=2185731 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPLOWO2_02_FULL_OD1_Yanofskybacteria_45_18_curated
PLM4_65_coex_sep16_scaffold_2541_20
unknown

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comp(15008..15289)
DNA (282bp) protein (94aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2541_21
unknown

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comp(15309..15473)
DNA (165bp) protein (55aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2541_trna_1
unknown

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15336..15407
DNA (72bp)
transferRNA Met
PLM4_65_coex_sep16_scaffold_2541_trna_2
unknown

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15528..15601
DNA (74bp)
transferRNA Met
PLM4_65_coex_sep16_scaffold_2541_22
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

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15753..17036
DNA (1284bp) protein (428aa)
Processing peptidase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
zinc protease
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM4_65_coex_sep16_scaffold_2541_23
R_RIF_OD1_06_37_25b, RIF-OD1-6, Parcubacteria, Bacteria

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17043..18092
DNA (1050bp) protein (350aa)
Conserved hypothetical membrane protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_37_25b_curated
PLM4_65_coex_sep16_scaffold_2541_24
R_OD1_Yanofskybacteria_44_22, Yanofskybacteria, Parcubacteria, Bacteria

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18110..18832
DNA (723bp) protein (241aa)
uroporphyrin-III C/tetrapyrrole methyltransferase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
uroporphyrin-III C/tetrapyrrole methyltransferase
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_22_curated
PLM4_65_coex_sep16_scaffold_2541_25
R_OD1_Yanofskybacteria_45_18, Yanofskybacteria, Parcubacteria, Bacteria

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18822..20264
DNA (1443bp) protein (481aa)
clj:CLJU_c01730 metS; methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
Tax=RIFCSPLOWO2_02_FULL_OD1_Yanofskybacteria_45_18_curated
PLM4_65_coex_sep16_scaffold_2541_26
R_OD1_Yanofskybacteria_42_49, Yanofskybacteria, Parcubacteria, Bacteria

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20261..21034
DNA (774bp) protein (258aa)
Sec-independent protein TatD bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
TatD family hydrolase
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_42_49_curated
PLM4_65_coex_sep16_scaffold_2541_27
Microgenomates bacterium GW2011_GWC1_47_20, Microgenomates, Bacteria

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21344..25408
DNA (4065bp) protein (1355aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU68487.1}; species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWC1_47_20.;"
Displaying 29 items

View Taxonomy