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PLM4_65_coex_sep16_scaffold_5454

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_5454_1
unknown

Not on your lists

90..350
DNA (261bp) protein (87aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_5454_2
unknown

Not on your lists

593..853
DNA (261bp) protein (87aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_5454_3
RLO_RIF_OD1_05_38_22, RIF-OD1-5, Parcubacteria, Bacteria

Not on your lists

834..1658
DNA (825bp) protein (275aa)
alias=gwe2_scaffold_601_69 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_05_38_22_curated
PLM4_65_coex_sep16_scaffold_5454_4
GWA1_OP11_45_10_partial, Microgenomates, Bacteria

Not on your lists

1707..2570
DNA (864bp) protein (288aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT87181.1}; species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWA1_45_10.;"
hypothetical protein bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
hypothetical protein
PLM4_65_coex_sep16_scaffold_5454_5
unknown

Not on your lists

3473..3799
DNA (327bp) protein (109aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_5454_trna_1
unknown

Not on your lists

comp(4127..4198)
DNA (72bp)
transferRNA His
PLM4_65_coex_sep16_scaffold_5454_6
RIFOXYA2_FULL_Elusimicrobia_69_6_curated, Elusimicrobia, Bacteria

Not on your lists

comp(4294..4692)
DNA (399bp) protein (133aa)
DnaK suppressor protein; K06204 DnaK suppressor protein bin=CNBR_ACIDO species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
dksA; DnaK suppressor protein
Tax=RIFOXYA2_FULL_Elusimicrobia_69_6_curated
PLM4_65_coex_sep16_scaffold_5454_7
R_OD1_Yanofskybacteria_41_21, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


4809..6020
DNA (1212bp) protein (404aa)
Alanine--tRNA ligase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Alanine-tRNA ligase
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_41_21_curated
PLM4_65_coex_sep16_scaffold_5454_8
R_OD1_53_13, Parcubacteria, Bacteria

Not on your lists

6013..6285
DNA (273bp) protein (91aa)
Suspect SCG annotation. See neighboring gene [PLM4_65_coex_sep16_scaffold_5454_7].
Alanine--tRNA ligase bin=GWA1_ZB2_49_26 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Alanine-tRNA ligase
Tax=RIFCSPLOWO2_01_FULL_OD1_53_13_curated
PLM4_65_coex_sep16_scaffold_5454_9
GWF2_OD1_40_12, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

6287..6592
DNA (306bp) protein (102aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR42934.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWF2_40_12.;"
PLM4_65_coex_sep16_scaffold_5454_10
unknown

Not on your lists

comp(6663..6890)
DNA (228bp) protein (76aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_5454_11
GWA2_OD1_41_22_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

7337..7969
DNA (633bp) protein (211aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS01640.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_41_22.;"
Probable DNA-directed RNA polymerase subunit delta bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
PLM4_65_coex_sep16_scaffold_5454_12
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

8037..9245
DNA (1209bp) protein (403aa)
Probable DNA-directed RNA polymerase subunit delta bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM4_65_coex_sep16_scaffold_5454_13
R_OD1_Yanofskybacteria_44_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


9936..10319
DNA (384bp) protein (128aa)
30S ribosomal protein S13 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
30S ribosomal protein S13
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_22_curated
PLM4_65_coex_sep16_scaffold_5454_14
R_OD1_Yanofskybacteria_43_32, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


10467..10907
DNA (441bp) protein (147aa)
Ribosomal protein S11 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
rpsK; 30S ribosomal protein S11
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_32_curated
PLM4_65_coex_sep16_scaffold_5454_15
R_OD1_Yanofskybacteria_38_22b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


10927..11562
DNA (636bp) protein (212aa)
30S ribosomal protein S4 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
30S ribosomal protein S4
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_38_22b_curated
PLM4_65_coex_sep16_scaffold_5454_16
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

11789..12538
DNA (750bp) protein (250aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
PLM4_65_coex_sep16_scaffold_5454_17
R_OD1_Yanofskybacteria_41_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


12545..12892
DNA (348bp) protein (116aa)
50S ribosomal protein L17 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
50S ribosomal protein L17
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_11_curated
PLM4_65_coex_sep16_scaffold_5454_18
R_OD1_Yanofskybacteria_44_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


13044..13382
DNA (339bp) protein (113aa)
50S ribosomal protein L13 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RplM; 50S ribosomal protein L13
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_22_curated
PLM4_65_coex_sep16_scaffold_5454_19
R_OD1_Yanofskybacteria_45_18, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


13387..13983
DNA (597bp) protein (199aa)
30S ribosomal protein S9 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
30S ribosomal protein S9
Tax=RIFCSPLOWO2_02_FULL_OD1_Yanofskybacteria_45_18_curated
PLM4_65_coex_sep16_scaffold_5454_20
GWA1_OD1_44_24_partial, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

14051..14689
DNA (639bp) protein (213aa)
Tax=GWA1_OD1_44_24_partial
Displaying 21 items

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