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PLM4_65_coex_sep16_scaffold_331

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_331_1
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2..1090)
DNA (1089bp) protein (363aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein bin=GWC2_Pelobacter_58_13 species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
sensor histidine kinase response regulator, Cache_1, HAMP, PAS, PAS, PAS, PAS and PAS domain-containing
Tax=GWC2_Pelobacteraceae_58_13_curated
PLM4_65_coex_sep16_scaffold_331_2
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1123..3345)
DNA (2223bp) protein (741aa)
PAS/PAC sensor hybrid histidine kinase bin=GWA2_Elusi_like_61_42 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi
PAS/PAC sensor hybrid histidine kinase
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_331_3
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3320..4399)
DNA (1080bp) protein (360aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
Chemotaxis response regulator protein-glutamate methylesterase Tax=Geobacter sp. (strain M18) RepID=E8WK81_GEOS8
response regulator receiver modulated CheB methylesterase
PLM4_65_coex_sep16_scaffold_331_4
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4401..6683)
DNA (2283bp) protein (761aa)
CheA signal transduction histidine kinase Tax=Geobacter sp. (strain M18) RepID=E8WK82_GEOS8
CheA signal transduction histidine kinase
CheA signal transduction histidine kinase {ECO:0000313|EMBL:ADW11567.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM4_65_coex_sep16_scaffold_331_5
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6770..8221)
DNA (1452bp) protein (484aa)
Methyl-accepting chemotaxis sensory transducer Tax=Geobacter sp. (strain M18) RepID=E8WK83_GEOS8
methyl-accepting chemotaxis sensory transducer
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ADW11568.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM4_65_coex_sep16_scaffold_331_6
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8378..9424)
DNA (1047bp) protein (349aa)
CheW protein Tax=Geobacter sp. (strain M18) RepID=E8WK84_GEOS8
CheW protein
CheW protein {ECO:0000313|EMBL:ADW11569.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM4_65_coex_sep16_scaffold_331_7
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9444..10853)
DNA (1410bp) protein (470aa)
CheR-type MCP methyltransferase (EC:2.1.1.80)
MCP methyltransferase, CheR-type {ECO:0000313|EMBL:ADW11570.1}; EC=2.1.1.80 {ECO:0000313|EMBL:ADW11570.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
MCP methyltransferase, CheR-type Tax=Geobacter sp. (strain M18) RepID=E8WK85_GEOS8
PLM4_65_coex_sep16_scaffold_331_8
RBG_16_Nitrospirae_43_11_curated, Nitrospirae, Bacteria

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comp(10924..11985)
DNA (1062bp) protein (354aa)
Response regulator receiver modulated metal dependent phosphohydrolase Tax=Geobacter sp. (strain M21) RepID=C6E7W7_GEOSM
response regulator receiver modulated metal dependent phosphohydrolase
Tax=RBG_16_Nitrospirae_43_11_curated
PLM4_65_coex_sep16_scaffold_331_9
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12279..14336)
DNA (2058bp) protein (686aa)
PAS/PAC sensor hybrid histidine kinase bin=GWC2_Geobacteraceae_55_20 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
multi-sensor hybrid histidine kinase
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_331_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14772..15419
DNA (648bp) protein (216aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5J6_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ27064.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_331_11
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15463..15810)
DNA (348bp) protein (116aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5J7_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ27065.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_331_12
Calditerrivibrio nitroreducens, Calditerrivibrio, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(15926..17545)
DNA (1620bp) protein (540aa)
fumarase (EC:4.2.1.2)
Fumarase {ECO:0000313|EMBL:ADR18898.1}; EC=4.2.1.2 {ECO:0000313|EMBL:ADR18898.1};; species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae.;" source="Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 /; Yu37-1).;"
Fumarase Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4THW8_CALNY
PLM4_65_coex_sep16_scaffold_331_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17863..18228
DNA (366bp) protein (122aa)
Response regulator receiver protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBW5_GEOUR
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ABQ24932.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_331_14
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18432..21245)
DNA (2814bp) protein (938aa)
Fibronectin type III domain-containing protein Tax=Geobacter sp. (strain M18) RepID=E8WLA0_GEOS8
Cytochrome c {ECO:0000313|EMBL:ABB30537.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
fibronectin type III domain-containing protein
PLM4_65_coex_sep16_scaffold_331_15
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22139..22804
DNA (666bp) protein (222aa)
Putative uncharacterized protein bin=GWB2_Geobacter-like_52_12 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWB2_Geobacteraceae_52_12_curated
PLM4_65_coex_sep16_scaffold_331_16
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22959..23342)
DNA (384bp) protein (128aa)
Hemerythrin-like metal-binding protein bin=GWF2_Geobacter_54_21 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
hemerythrin-like metal-binding protein
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_331_17
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23456..24160)
DNA (705bp) protein (235aa)
Pseudouridine synthase bin=GWD2_Desulfuromonadales_54_10 species=Desulfotalea psychrophila genus=Desulfotalea taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
pseudouridine synthase
Tax=GWD2_Desulfuromonadales_54_10_curated
PLM4_65_coex_sep16_scaffold_331_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24157..25038)
DNA (882bp) protein (294aa)
Ribosome biogenesis GTPase A Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GEE5_GEOUR
HSR1-like GTP-binding protein
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_331_19
unknown

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comp(25608..25916)
DNA (309bp) protein (103aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_331_20
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26100..26384)
DNA (285bp) protein (95aa)
Cytochrome c3 Tax=Geobacter sp. (strain M21) RepID=C6E9P9_GEOSM
cytochrome C3
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_331_21
Nitratifractor salsuginis, Nitratifractor, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

27059..27343
DNA (285bp) protein (95aa)
Thioesterase superfamily protein Tax=Nitratifractor salsuginis (strain DSM 16511 / JCM 12458 / E9I37-1) RepID=E6X073_NITSE
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ADV45662.1}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Nitratifractor.;" source="Nitratifractor salsuginis (strain DSM 16511 / JCM 12458 / E9I37-1).;"
PLM4_65_coex_sep16_scaffold_331_22
CG_Syntroph_02, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27528..28361)
DNA (834bp) protein (278aa)
CheW4: chemotaxis protein CheW Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0ND57_DESTT
cheW4; chemotaxis protein CheW CheW4
Tax=CG_Syntroph_02
PLM4_65_coex_sep16_scaffold_331_23
unknown

Not on your lists

29033..29335
DNA (303bp) protein (101aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_331_24
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29558..29953)
DNA (396bp) protein (132aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9M5_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ28493.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_331_trna_1
unknown

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comp(30990..31073)
DNA (84bp)
transferRNA Leu
PLM4_65_coex_sep16_scaffold_331_25
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31263..31544)
DNA (282bp) protein (94aa)
Histone family protein DNA-binding protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GE12_GEOUR
Integration host factor subunit beta {ECO:0000313|EMBL:GAM07980.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
histone family protein DNA-binding protein
PLM4_65_coex_sep16_scaffold_331_26
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(31598..33349)
DNA (1752bp) protein (584aa)
30S ribosomal protein S1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GE11_GEOUR
30S ribosomal protein S1 {ECO:0000313|EMBL:GAM07981.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
rpsA; 30S ribosomal protein S1
PLM4_65_coex_sep16_scaffold_331_27
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33419..34255)
DNA (837bp) protein (279aa)
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000255|HAMAP-Rule:MF_00191}; EC=1.17.1.2 {ECO:0000255|HAMAP-Rule:MF_00191};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase Tax=Geobacter uraniireducens (strain Rf4) RepID=ISPH_GEOUR
Displaying 28 items

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