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PLM4_65_coex_sep16_scaffold_748

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_748_1
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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comp(2..754)
DNA (753bp) protein (251aa)
electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1)
4Fe-4S ferredoxin Tax=Desulfovibrio longus RepID=UPI0003B5CFCD
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
PLM4_65_coex_sep16_scaffold_748_2
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(803..3034)
DNA (2232bp) protein (744aa)
Acyl-CoA dehydrogenase domain protein bin=GWC2_Pelobacter_58_13 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
acyl-CoA dehydrogenase
Tax=GWC2_Pelobacteraceae_58_13_curated
PLM4_65_coex_sep16_scaffold_748_3
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3282..3809
DNA (528bp) protein (176aa)
methionine-R-sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrB bin=GWB2_Pelobacter_53_15 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
Tax=GWD2_Desulfuromonadales_54_10_curated
PLM4_65_coex_sep16_scaffold_748_4
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4082..5725)
DNA (1644bp) protein (548aa)
60 kDa chaperonin Tax=Geobacter uraniireducens (strain Rf4) RepID=CH60_GEOUR
groEL; chaperonin GroEL
60 kDa chaperonin {ECO:0000255|HAMAP-Rule:MF_00600}; GroEL protein {ECO:0000255|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000255|HAMAP-Rule:MF_00600}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_748_5
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5871..6158)
DNA (288bp) protein (96aa)
10 kDa chaperonin Tax=Geobacter metallireducens RepID=CH10_GEOMG
groES; co-chaperonin GroES
10 kDa chaperonin {ECO:0000255|HAMAP-Rule:MF_00580}; GroES protein {ECO:0000255|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000255|HAMAP-Rule:MF_00580}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_748_6
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6469..6741)
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LZ38_GEODF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM18770.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_748_7
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6827..7111)
DNA (285bp) protein (95aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9H8_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ28446.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_748_8
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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7225..8304
DNA (1080bp) protein (360aa)
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase Tax=Geobacter sulfurreducens RepID=D7AG45_GEOSK
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:GAM08704.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
aroG-1; 3-deoxy-7-phosphoheptulonate synthase
PLM4_65_coex_sep16_scaffold_748_9
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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8619..9068
DNA (450bp) protein (150aa)
Phosphatidylglycerophosphatase A {ECO:0000256|PIRNR:PIRNR006162}; EC=3.1.3.27 {ECO:0000256|PIRNR:PIRNR006162};; Phosphatidylglycerolphosphate phosphatase A {ECO:0000256|PIRNR:PIRNR006162}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
Phosphatidylglycerophosphatase A Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M362_GEODF
phosphatidylglycerophosphatase A
PLM4_65_coex_sep16_scaffold_748_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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9065..10279
DNA (1215bp) protein (405aa)
CinA-like protein Tax=Geobacter uraniireducens (strain Rf4) RepID=CINAL_GEOUR
competence/damage-inducible protein CinA
CinA-like protein {ECO:0000255|HAMAP-Rule:MF_00226}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_748_11
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10329..12443
DNA (2115bp) protein (705aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
GAF sensor signal transduction histidine kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDB5_GEOUR
multi-sensor signal transduction histidine kinase
PLM4_65_coex_sep16_scaffold_748_12
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12579..13595
DNA (1017bp) protein (339aa)
recA; recombinase A (EC:3.6.3.8)
Protein RecA Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDB6_GEOUR
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_748_13
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13599..14762
DNA (1164bp) protein (388aa)
Twitching motility pilus retraction protein Tax=Geobacter sulfurreducens RepID=D7AM57_GEOSK
pilT-1; twitching motility pilus retraction protein
Twitching motility protein PilT {ECO:0000313|EMBL:AJY69882.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
PLM4_65_coex_sep16_scaffold_748_14
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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14749..15249
DNA (501bp) protein (167aa)
Regulatory protein RecX Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDB8_GEOUR
regulatory protein RecX
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_748_15
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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15360..18014
DNA (2655bp) protein (885aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
Alanine--tRNA ligase Tax=Geobacter sulfurreducens RepID=SYA_GEOSL
alaS; alanyl-tRNA ligase
PLM4_65_coex_sep16_scaffold_748_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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18017..19123
DNA (1107bp) protein (369aa)
Response regulator receiver sensor signal transduction histidine kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDA0_GEOUR
response regulator receiver sensor signal transduction histidine kinase
Response regulator receiver sensor signal transduction histidine kinase {ECO:0000313|EMBL:ABQ24440.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_748_17
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(19288..19977)
DNA (690bp) protein (230aa)
id=3989123 bin=GWF2_Geobacter_54_21 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_748_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20519..21406
DNA (888bp) protein (296aa)
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase {ECO:0000255|HAMAP-Rule:MF_00082}; EC=2.7.2.8 {ECO:0000255|HAMAP-Rule:MF_00082};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000255|HAMAP-Rule:MF_00082}; Short=AGK {ECO:0000255|HAMAP-Rule:MF_00082};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Acetylglutamate kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=ARGB_GEOUR
PLM4_65_coex_sep16_scaffold_748_19
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21406..22596
DNA (1191bp) protein (397aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Acetylornithine aminotransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDA2_GEOUR
acetylornithine aminotransferase
PLM4_65_coex_sep16_scaffold_748_20
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22682..23599
DNA (918bp) protein (306aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
Ornithine carbamoyltransferase Tax=Geobacter sulfurreducens RepID=OTC_GEOSL
argF; ornithine carbamyltransferase
PLM4_65_coex_sep16_scaffold_748_21
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23633..24850
DNA (1218bp) protein (406aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
Argininosuccinate synthase Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=ASSY_GEODF
argininosuccinate synthase
PLM4_65_coex_sep16_scaffold_748_22
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24863..26239
DNA (1377bp) protein (459aa)
Argininosuccinate lyase {ECO:0000255|HAMAP-Rule:MF_00006}; Short=ASAL {ECO:0000255|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000255|HAMAP-Rule:MF_00006};; Arginosuccinase {ECO:0000255|HAMAP-Rule:MF_00006}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
Argininosuccinate lyase Tax=Geobacter metallireducens RepID=ARLY_GEOMG
argH; argininosuccinate lyase
PLM4_65_coex_sep16_scaffold_748_23
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26236..27024
DNA (789bp) protein (263aa)
Fibronectin, type III domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDA8_GEOUR
fibronectin I domain-containing protein
Fibronectin, type III domain protein {ECO:0000313|EMBL:ABQ24448.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_748_24
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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27105..28358
DNA (1254bp) protein (418aa)
Diaminopimelate decarboxylase Tax=Geobacter sp. (strain M18) RepID=E8WL15_GEOS8
diaminopimelate decarboxylase
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_748_25
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28455..29327
DNA (873bp) protein (291aa)
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000255|HAMAP-Rule:MF_00418}; Short=HTPA synthase {ECO:0000255|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000255|HAMAP-Rule:MF_00418};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
4-hydroxy-tetrahydrodipicolinate synthase Tax=Geobacter uraniireducens (strain Rf4) RepID=DAPA_GEOUR
PLM4_65_coex_sep16_scaffold_748_26
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29345..30148
DNA (804bp) protein (268aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
4-hydroxy-tetrahydrodipicolinate reductase Tax=Geobacter sp. (strain M18) RepID=E8WL13_GEOS8
PLM4_65_coex_sep16_scaffold_748_27
Geobacter sp. M21, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30196..31299
DNA (1104bp) protein (368aa)
LL-diaminopimelate aminotransferase {ECO:0000255|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000255|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000255|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000255|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000255|HAMAP-Rule:MF_01642};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M21).;"
LL-diaminopimelate aminotransferase Tax=Geobacter sp. (strain M21) RepID=DAPAT_GEOSM
L,L-diaminopimelate aminotransferase
Displaying 27 items

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