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PLM4_65_coex_sep16_scaffold_1118

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_1118_1
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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134..604
DNA (471bp) protein (157aa)
Nitrogen-fixing NifU domain protein Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AQB7_PELPD
NifU domain-containing protein
Nitrogen-fixing NifU domain protein {ECO:0000313|EMBL:ABK99537.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
PLM4_65_coex_sep16_scaffold_1118_2
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(636..1031)
DNA (396bp) protein (132aa)
Molybdopterin biosynthesis MoaE Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AQF8_PELPD
molybdopterin biosynthesis MoaE
Molybdopterin biosynthesis MoaE {ECO:0000313|EMBL:ABK99578.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
PLM4_65_coex_sep16_scaffold_1118_3
RIFOXYB2_FULL_RIF07_49_35_curated, RIF7, Bacteria

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1858..2046
DNA (189bp) protein (63aa)
hypothetical protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
Tax=RIFOXYB2_FULL_RIF07_49_35_curated
PLM4_65_coex_sep16_scaffold_1118_4
unknown

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2096..2314
DNA (219bp) protein (73aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1118_5
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2289..2588
DNA (300bp) protein (100aa)
Dinitrogenase iron-molybdenum cofactor biosynthesis Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AQE4_PELPD
dinitrogenase iron-molybdenum cofactor biosynthesis
Dinitrogenase iron-molybdenum cofactor biosynthesis {ECO:0000313|EMBL:ABK99564.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
PLM4_65_coex_sep16_scaffold_1118_6
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2585..3457
DNA (873bp) protein (291aa)
cobyrinic acid a,c-diamide synthase bin=RBG_16_Aminicenantes_63_14 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
cobyrinic acid a,c-diamide synthase
Cobyrinic acid a,c-diamide synthase {ECO:0000313|EMBL:ABK99563.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
PLM4_65_coex_sep16_scaffold_1118_7
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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3438..4334
DNA (897bp) protein (299aa)
Cobyrinic acid a,c-diamide synthase Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AQE0_PELPD
cobyrinic acid a,c-diamide synthase
Tax=BJP_IG2102_Syntrophobacterales_60_12
PLM4_65_coex_sep16_scaffold_1118_8
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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4478..4735
DNA (258bp) protein (86aa)
Hypothetical cytosolic protein Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LWG1_SYNAS
cytoplasmic protein
Hypothetical cytosolic protein {ECO:0000313|EMBL:ABC78421.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
PLM4_65_coex_sep16_scaffold_1118_9
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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4741..5700
DNA (960bp) protein (320aa)
Putative radical SAM domain-containing transcription regulator TrmB Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LHH2_THEPS
radical SAM domain-containing transcription regulator TrmB
Putative radical SAM domain-containing transcription regulator TrmB {ECO:0000313|EMBL:AFV12451.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB).;"
PLM4_65_coex_sep16_scaffold_1118_10
RIFOXYB2_FULL_RIF07_49_35_curated, RIF7, Bacteria

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5730..6959
DNA (1230bp) protein (410aa)
ATPase-like, ParA/MinD bin=GWC2_Syntrophus__56_31 species=Desulfohalobium retbaense genus=Desulfohalobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
ParA/MinD-like ATPase
Tax=RIFOXYB2_FULL_RIF07_49_35_curated
PLM4_65_coex_sep16_scaffold_1118_11

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7065..7619
DNA (555bp) protein (185aa)
Rubrerythrin Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AR77_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KKL79881.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rubrerythrin
PLM4_65_coex_sep16_scaffold_1118_12
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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7675..8562
DNA (888bp) protein (296aa)
Cation diffusion facilitator family transporter Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G751_GEOUR
cation diffusion facilitator family transporter
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:ABQ27619.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1118_13
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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8620..9123
DNA (504bp) protein (168aa)
Ferritin Dps family protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E9H5_GEOLS
Ferritin {ECO:0000313|EMBL:AJY71374.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
ferritin
PLM4_65_coex_sep16_scaffold_1118_14
Smithella sp. D17, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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9286..9729
DNA (444bp) protein (148aa)
Metal-binding-like protein {ECO:0000313|EMBL:KFZ45174.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. D17.;"
metal-binding protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
CGGC domain-containing protein
PLM4_65_coex_sep16_scaffold_1118_15
Desulfobulbus propionicus, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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9837..10337
DNA (501bp) protein (167aa)
Uncharacterized protein family UPF0066 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RCM4_DESPD
hypothetical protein
Uncharacterized protein family UPF0066 {ECO:0000313|EMBL:ADW16812.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3).;"
PLM4_65_coex_sep16_scaffold_1118_16
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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10355..10993
DNA (639bp) protein (213aa)
ubiE2; protein UbiE2 (EC:2.1.1.-)
Uncharacterized protein {ECO:0000313|EMBL:AJY71387.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
UbiE2 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
PLM4_65_coex_sep16_scaffold_1118_17
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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11152..11592
DNA (441bp) protein (147aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G749_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ27617.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1118_18
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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11649..12734
DNA (1086bp) protein (362aa)
Cofactor modifying protein (Cmo) Tax=Vulcanisaeta moutnovskia (strain 768-28) RepID=F0QWF2_VULM7
cofactor modifying protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_65_coex_sep16_scaffold_1118_19

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12931..13404
DNA (474bp) protein (158aa)
hpt2; hypoxanthine-guanine phosphoribosyltransferase; K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
hpt; hypoxanthine-guanine phosphoribosyltransferase (EC:2.4.2.8)
Marine sediment metagenome DNA, contig: S06H3_C00329 {ECO:0000313|EMBL:GAH96894.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_65_coex_sep16_scaffold_1118_20
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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13398..15101
DNA (1704bp) protein (568aa)
det:DET0791 ade; adenine deaminase (EC:3.5.4.2); K01486 adenine deaminase [EC:3.5.4.2] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
ade; adenine deaminase (EC:3.5.4.2)
Tax=RBG_16_Chloroflexi_51_9_curated
PLM4_65_coex_sep16_scaffold_1118_21
Vulcanisaeta moutnovskia, Vulcanisaeta, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

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15149..15613
DNA (465bp) protein (155aa)
Cofactor modifying protein (Cmo) Tax=Vulcanisaeta moutnovskia (strain 768-28) RepID=F0QWF2_VULM7
cofactor modifying protein
Cofactor modifying protein (Cmo) {ECO:0000313|EMBL:ADY01000.1}; species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Vulcanisaeta.;" source="Vulcanisaeta moutnovskia (strain 768-28).;"
PLM4_65_coex_sep16_scaffold_1118_22
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

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15711..16346
DNA (636bp) protein (212aa)
Pedicted SAM-dependent methyltransferase Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W826_UNCMA
pedicted SAM-dependent methyltransferase
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
PLM4_65_coex_sep16_scaffold_1118_23
Desulfatitalea sp. BRH_c12, Desulfatitalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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16454..17233
DNA (780bp) protein (260aa)
short chain enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase/isomerase family protein Tax=delta proteobacterium NaphS2 RepID=D8F123_9DELT
Enoyl-CoA hydratase {ECO:0000313|EMBL:KJS32723.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatitalea.;" source="Desulfatitalea sp. BRH_c12.;"
PLM4_65_coex_sep16_scaffold_1118_24
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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17261..18397
DNA (1137bp) protein (379aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI00036A938E
Fe-S oxidoreductase
Tax=RBG_16_Anaeromyxobacter_69_14_curated
PLM4_65_coex_sep16_scaffold_1118_25
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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18632..19894
DNA (1263bp) protein (421aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase family protein, rhodanese homology domain-containing Tax=Geobacter metallireducens RepID=Q39PY5_GEOMG
FAD-dependent pyridine nucleotide-disulfide oxidoreductase family protein
FAD-dependent pyridine nucleotide-disulfide oxidoreductase family protein, rhodanese homology domain-containing {ECO:0000313|EMBL:ABB33689.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
Displaying 25 items

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