ggKbase home page

PLM4_65_coex_sep16_scaffold_1162

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_1162_1
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1817
DNA (1815bp) protein (605aa)
Translation elongation factor G Tax=Geobacter sulfurreducens RepID=D7AKD0_GEOSK
Elongation factor G {ECO:0000313|EMBL:KIE42024.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
fusA-1; elongation factor G
PLM4_65_coex_sep16_scaffold_1162_2
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1941..3008
DNA (1068bp) protein (356aa)
Sporulation domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5B9_GEOUR
sporulation domain-containing protein
Sporulation domain protein {ECO:0000313|EMBL:ABQ26987.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1162_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3019..3909
DNA (891bp) protein (297aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5B8_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26986.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1162_4
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3935..4855
DNA (921bp) protein (307aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5B7_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26985.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1162_5
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4925..5125)
DNA (201bp) protein (67aa)
Uncharacterized protein Tax=Geobacter metallireducens RepID=Q39R31_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB33293.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_1162_6
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5235..5459)
DNA (225bp) protein (75aa)
Thioredoxin/NifU-like domain protein Tax=Geobacter metallireducens RepID=Q39R30_GEOMG
thioredoxin/NifU-like domain-containing protein
Thioredoxin/NifU-like domain protein {ECO:0000313|EMBL:ABB33294.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_1162_7
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5477..6886)
DNA (1410bp) protein (470aa)
aspA; aspartate ammonia-lyase (EC:4.3.1.1)
Fumarase {ECO:0000313|EMBL:ABQ25146.1}; EC=4.2.1.2 {ECO:0000313|EMBL:ABQ25146.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Fumarase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GB90_GEOUR
PLM4_65_coex_sep16_scaffold_1162_8
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6995..7456)
DNA (462bp) protein (154aa)
Rubrerythrin Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GB91_GEOUR
rubrerythrin
Rubrerythrin {ECO:0000313|EMBL:ABQ25147.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1162_9
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7453..8091)
DNA (639bp) protein (213aa)
HAD-superfamily hydrolase, subfamily IA, variant 1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GB92_GEOUR
HAD family hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 1 {ECO:0000313|EMBL:ABQ25148.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1162_10
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8204..9361)
DNA (1158bp) protein (386aa)
Uncharacterized protein Tax=Geobacter metallireducens RepID=Q39R26_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE04329.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_1162_11
CG_Delta_06, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10284..10547
DNA (264bp) protein (88aa)
Putative uncharacterized protein Tax=uncultured Desulfobacterium sp. RepID=E1YJR2_9DELT
hypothetical protein
Tax=CG_Delta_06
PLM4_65_coex_sep16_scaffold_1162_12
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10544..10948
DNA (405bp) protein (135aa)
PilT protein domain protein bin=GWC2_Deltaproteobacteria_66_88 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
twitching motility protein PilT
Tax=BJP_IG2157_Desulfuromonadales_56_134
PLM4_65_coex_sep16_scaffold_1162_13
Marinobacter adhaerens, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11055..11747
DNA (693bp) protein (231aa)
Metallo-beta-lactamase family protein Tax=Marinobacter adhaerens (strain HP15) RepID=E4PIL3_MARAH
metallo-beta-lactamase family protein
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:ADP97088.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter adhaerens (strain HP15).;"
PLM4_65_coex_sep16_scaffold_1162_14
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12062..13231
DNA (1170bp) protein (390aa)
Putative uncharacterized protein bin=GWF2_Geobacter_54_21 species=Congregibacter litoralis genus=Congregibacter taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
AAA family ATPase
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_1162_15
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13297..14565
DNA (1269bp) protein (423aa)
Diguanylate cyclase Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M9A9_GEODF
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ACM18667.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_1162_16
Desulfotalea psychrophila, Desulfotalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14742..16007)
DNA (1266bp) protein (422aa)
Probable reverse transcriptase/maturase family protein Tax=Desulfotalea psychrophila (strain LSv54 / DSM 12343) RepID=Q6AIH8_DESPS
reverse transcriptase/maturase family protein
Probable reverse transcriptase/maturase family protein {ECO:0000313|EMBL:CAG37869.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfotalea.;" source="Desulfotalea psychrophila (strain LSv54 / DSM 12343).;"
PLM4_65_coex_sep16_scaffold_1162_17
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16825..17340)
DNA (516bp) protein (172aa)
50S ribosomal protein L17 Tax=Geobacter uraniireducens (strain Rf4) RepID=RL17_GEOUR
rplQ; 50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
Displaying 17 items

View Taxonomy