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PLM4_65_coex_sep16_scaffold_2021

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2021_1
Geobacter sp. M21, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3..404
DNA (402bp) protein (134aa)
Putative cellulose biosynthesis (CelD) protein Tax=Geobacter sp. (strain M21) RepID=C6DZW3_GEOSM
cellulose biosynthesis (CelD) protein
Putative cellulose biosynthesis (CelD) protein {ECO:0000313|EMBL:ACT18507.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M21).;"
PLM4_65_coex_sep16_scaffold_2021_2
unknown

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469..981
DNA (513bp) protein (171aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2021_3
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1140..1685
DNA (546bp) protein (182aa)
Uncharacterized protein Tax=Lachnospiraceae bacterium A4 RepID=R9IF86_9FIRM
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:GAM08021.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Methyltransferase domain protein
PLM4_65_coex_sep16_scaffold_2021_4
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1689..2675
DNA (987bp) protein (329aa)
Polysaccharide deacetylase {ECO:0000313|EMBL:GAM08022.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Putative xylanase/chitin deacetylase bin=GWC2_Nitrospirae-rel_56_14 species=Crinalium epipsammum genus=Crinalium taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
polysaccharide deacetylase
PLM4_65_coex_sep16_scaffold_2021_5
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2672..3925
DNA (1254bp) protein (418aa)
Glycosyl transferase, group 1 family protein Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VTG7_9CYAN
D-inositol 3-phosphate glycosyltransferase 2 {ECO:0000313|EMBL:GAM08023.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
group 1 glycosyl transferase
PLM4_65_coex_sep16_scaffold_2021_6
Enterococcus haemoperoxidus, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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4016..5521
DNA (1506bp) protein (502aa)
Uncharacterized protein Tax=Lachnospiraceae bacterium A4 RepID=R9IFF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOH92754.1}; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus haemoperoxidus ATCC BAA-382.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_2021_7
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5538..6845
DNA (1308bp) protein (436aa)
Putative Amine oxidase Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J934_HYPSM
amine oxidase
Putative Amine oxidase {ECO:0000313|EMBL:CCB66152.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
PLM4_65_coex_sep16_scaffold_2021_8
R_RIF_OP11_03_48_12, RIF-OP11-3, Microgenomates, Bacteria

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6842..7552
DNA (711bp) protein (237aa)
Glycosyl transferase, group 2 family protein Tax=Plesiocystis pacifica SIR-1 RepID=A6G2Z9_9DELT
family 2 glycosyl transferase
Tax=RIFCSPHIGHO2_01_FULL_RIF_OP11_03_48_12_curated
PLM4_65_coex_sep16_scaffold_2021_9
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7567..8544
DNA (978bp) protein (326aa)
Glycosyltransferase bin=GWC2_Nitrospirae-rel_56_14 species=Leptospira terpstrae genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_2021_10
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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8552..9658
DNA (1107bp) protein (369aa)
Glycosyl transferase group 1 Tax=Desulfovibrio desulfuricans ND132 RepID=F0JE82_DESDE
Low-salt glycan biosynthesis hexosyltransferase Agl5 {ECO:0000313|EMBL:GAM08026.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
group 1 glycosyl transferase
PLM4_65_coex_sep16_scaffold_2021_11
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9708..10190)
DNA (483bp) protein (161aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM08027.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
PLM4_65_coex_sep16_scaffold_2021_12
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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10546..12078
DNA (1533bp) protein (511aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM08028.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
hypothetical protein bin=WS6_GWC1_33_20 species=WS6_GWC1_33_22 genus=WS6_GWC1_33_22 taxon_order=WS6_GWC1_33_22 taxon_class=WS6_GWC1_33_22 phylum=WS6 tax=WS6_GWC1_33_20 organism_group=WS6 (Doikabacteria)
PLM4_65_coex_sep16_scaffold_2021_13
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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12193..12906
DNA (714bp) protein (238aa)
TPR repeat-containing protein Tax=Pedosphaera parvula Ellin514 RepID=B9XBT7_9BACT
Transmembrane and TPR repeat-containing protein F38B6.6 {ECO:0000313|EMBL:GAM08029.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
TPR repeat-containing protein
PLM4_65_coex_sep16_scaffold_2021_14
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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12903..13718
DNA (816bp) protein (272aa)
Transmembrane and TPR repeat-containing protein F38B6.6 {ECO:0000313|EMBL:GAM08029.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Tetratricopeptide TPR_2 repeat protein bin=GWC2_Nitrospirae-rel_56_14 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
PLM4_65_coex_sep16_scaffold_2021_15
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13870..14466)
DNA (597bp) protein (199aa)
Radical SAM domain protein Tax=Geobacter sp. (strain M21) RepID=C6E621_GEOSM
Anaerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase {ECO:0000313|EMBL:GAM08011.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
radical SAM protein
PLM4_65_coex_sep16_scaffold_2021_16
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14508..15197)
DNA (690bp) protein (230aa)
Radical SAM domain protein Tax=Geobacter sp. (strain M18) RepID=E8WR47_GEOS8
Anaerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase {ECO:0000313|EMBL:GAM08011.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
radical SAM protein
PLM4_65_coex_sep16_scaffold_2021_17
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15486..16565)
DNA (1080bp) protein (360aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI00037E18D1
two-component sensor histidine kinase
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_2021_18
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16609..17328)
DNA (720bp) protein (240aa)
Two component transcriptional regulator, winged helix family bin=GWB2_Desulfobacterales_56_26 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
two component transcriptional regulator
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_2021_19
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(17408..17731)
DNA (324bp) protein (108aa)
Rhodanese homology domain superfamily protein Tax=Geobacter sulfurreducens RepID=D7AGR0_GEOSK
Thiosulfate sulfurtransferase PspE {ECO:0000313|EMBL:GAM08014.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_2021_20
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(17816..19210)
DNA (1395bp) protein (465aa)
Radical SAM domain protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7Y5_GEODF
radical SAM protein
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_2021_21
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(19702..20979)
DNA (1278bp) protein (426aa)
Putative uncharacterized protein Tax=Geobacter sp. (strain M18) RepID=E8WR44_GEOS8
hypothetical protein
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_2021_22
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20976..22148)
DNA (1173bp) protein (391aa)
Putative uncharacterized protein Tax=Geobacter sp. (strain M18) RepID=E8WR43_GEOS8
Uncharacterized protein {ECO:0000313|EMBL:GAM08032.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_2021_23
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22148..22822)
DNA (675bp) protein (225aa)
ABC transporter related protein Tax=Geobacter sp. (strain M21) RepID=C6E617_GEOSM
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000313|EMBL:GAM08033.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
ABC transporter
PLM4_65_coex_sep16_scaffold_2021_24
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(22981..23178)
DNA (198bp) protein (66aa)
ABC transporter related protein Tax=Geobacter sp. (strain M18) RepID=E8WR42_GEOS8
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000313|EMBL:GAM08033.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
ABC transporter-like protein
Displaying 24 items

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