ggKbase home page

PLM4_65_coex_sep16_scaffold_2720

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2720_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..401)
DNA (399bp) protein (133aa)
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Dephospho-CoA kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7M8_GEOUR
PLM4_65_coex_sep16_scaffold_2720_2
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

677..2785
DNA (2109bp) protein (703aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P8N1_DEFDS
NADH-ubiquinone oxidoreductase subunit 3
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_2720_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2820..5357
DNA (2538bp) protein (846aa)
Molybdopterin oxidoreductase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7M4_GEOUR
molybdopterin oxidoreductase
Molybdopterin oxidoreductase {ECO:0000313|EMBL:ABQ27792.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2720_4
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5394..5879)
DNA (486bp) protein (162aa)
Rubrerythrin Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7L9_GEODF
rubrerythrin
Ferritin-like domain protein {ECO:0000313|EMBL:ACM22125.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_2720_5
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6075..8510
DNA (2436bp) protein (812aa)
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:ABL00606.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ABL00606.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
Multi-sensor hybrid histidine kinase Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ATD5_PELPD
multi-sensor hybrid histidine kinase
PLM4_65_coex_sep16_scaffold_2720_6
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8783..8986)
DNA (204bp) protein (68aa)
cold shock DNA/RNA-binding protein
Cold-shock DNA-binding domain protein bin=GWB2_Geobacter-like_52_12 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
Tax=GWB2_Geobacteraceae_52_12_curated
PLM4_65_coex_sep16_scaffold_2720_7
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9405..9668
DNA (264bp) protein (88aa)
Uncharacterized protein Tax=Geobacter sulfurreducens RepID=D7ADG0_GEOSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAR33526.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
PLM4_65_coex_sep16_scaffold_2720_8
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9742..10281)
DNA (540bp) protein (180aa)
RNase HI bin=GWB2_Pelobacter_53_15 species=Glaciecola arctica genus=Glaciecola taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
ribonuclease H
Tax=GWB2_Geobacteraceae_52_12_curated
PLM4_65_coex_sep16_scaffold_2720_9
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10656..11330
DNA (675bp) protein (225aa)
hypothetical protein
Conserved uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Uncharacterized protein {ECO:0000313|EMBL:AGF77291.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
PLM4_65_coex_sep16_scaffold_2720_10
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11549..12454
DNA (906bp) protein (302aa)
Putative nucleoside-diphosphate-sugar epimerase bin=GWC2_Geobacteraceae_55_20 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
nucleoside-diphosphate-sugar epimerase
Tax=GWD2_Desulfuromonadales_61_12_curated
PLM4_65_coex_sep16_scaffold_2720_11

Not on your lists

12629..12964
DNA (336bp) protein (112aa)
Uncharacterized protein Tax=Bacteria RepID=B5EET7_GEOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKD33926.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM4_65_coex_sep16_scaffold_2720_12
RHI_OD1_Moranbacteria_40_10, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(13096..14031)
DNA (936bp) protein (312aa)
Aspartate carbamoyl transferase bin=GWF1_Spirochaetes_51_8 species=unknown genus=unknown taxon_order=Poales taxon_class=Liliopsida phylum=Streptophyta tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
aspartate carbamoyltransferase
Tax=RIFCSPHIGHO2_12_FULL_OD1_Moranbacteria_40_10_curated
PLM4_65_coex_sep16_scaffold_2720_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14213..15433)
DNA (1221bp) protein (407aa)
L-threonine ammonia-lyase {ECO:0000313|EMBL:ABQ28179.1}; EC=4.3.1.19 {ECO:0000313|EMBL:ABQ28179.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
L-threonine ammonia-lyase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8R1_GEOUR
threonine dehydratase
PLM4_65_coex_sep16_scaffold_2720_14
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15430..16452)
DNA (1023bp) protein (341aa)
Cobalt/zinc/iron/cadmium/nickel efflux protein Tax=Geobacter metallireducens RepID=Q39R39_GEOMG
cation transporter
Cation transporter {ECO:0000313|EMBL:AJE04321.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_2720_15
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16612..17559
DNA (948bp) protein (316aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
Thioredoxin reductase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8Q8_GEOUR
thioredoxin reductase
PLM4_65_coex_sep16_scaffold_2720_16
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17635..19164
DNA (1530bp) protein (510aa)
Mg chelatase, subunit ChlI Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8Q7_GEOUR
ATP-dependent protease {ECO:0000313|EMBL:KIE41180.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
Mg chelatase subunit ChlI
PLM4_65_coex_sep16_scaffold_2720_17
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19231..19422
DNA (192bp) protein (64aa)
Co/Zn/Cd cation transporter-like protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G704_GEOUR
Co/Zn/Cd cation transporter-like protein
Tax=GWD2_Desulfuromonadales_61_12_curated
Displaying 17 items

View Taxonomy