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PLM4_65_coex_sep16_scaffold_2853

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2853_1
Geobacter sp. M21, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3..95)
DNA (93bp) protein (31aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M21).;"
Pyruvate-flavodoxin oxidoreductase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9K5_GEOUR
pyruvate ferredoxin/flavodoxin oxidoreductase
PLM4_65_coex_sep16_scaffold_2853_2
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(239..832)
DNA (594bp) protein (198aa)
Recombination protein RecR Tax=Geobacter metallireducens RepID=RECR_GEOMG
recombinase RecR
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_2853_3
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1136..1450)
DNA (315bp) protein (105aa)
Nucleoid-associated protein Geob_0377 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LZ14_GEODF
hypothetical protein
Nucleoid-associated protein Geob_0377 {ECO:0000256|HAMAP-Rule:MF_00274}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_2853_4
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1478..3238)
DNA (1761bp) protein (587aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, tau subunit {ECO:0000313|EMBL:ABQ28470.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ABQ28470.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
DNA polymerase III, tau subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9K2_GEOUR
PLM4_65_coex_sep16_scaffold_2853_5
RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3744..4628)
DNA (885bp) protein (295aa)
Uncharacterized protein Tax=Pseudanabaena biceps PCC 7429 RepID=L8N1G5_9CYAN
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated
PLM4_65_coex_sep16_scaffold_2853_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4720..5790)
DNA (1071bp) protein (357aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8J0_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ28108.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2853_7
RHI_OP11_Roizmanbacteria_36_11, Roizmannbacteria, Microgenomates, Bacteria

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comp(6098..7051)
DNA (954bp) protein (318aa)
Putative uncharacterized protein bin=GWF2_Melainabacteria_37_15 species=Methanococcus aeolicus genus=Methanococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWF2_Melainabacteria_37_15 organism_group=Melainabacteria
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_OP11_Roizmanbacteria_36_11_curated
PLM4_65_coex_sep16_scaffold_2853_8
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7081..9729)
DNA (2649bp) protein (883aa)
Putative uncharacterized protein Tax=Acidovorax sp. NO-1 RepID=H0C4M9_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL20363.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_2853_9
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(9740..11326)
DNA (1587bp) protein (529aa)
Putative uncharacterized protein Tax=Dysgonomonas mossii DSM 22836 RepID=F8WXK1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK04957.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
adenine specific DNA methylase Mod
PLM4_65_coex_sep16_scaffold_2853_10
CG_Fibrob_01, Fibrobacteria, Fibrobacteres, Fibrobacteres/Acidobacteria, Bacteria

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comp(11497..11964)
DNA (468bp) protein (156aa)
hypothetical protein Tax=Methylovulum miyakonense RepID=UPI00036337FE
hypothetical protein
Tax=CG_Fibrob_01
PLM4_65_coex_sep16_scaffold_2853_11
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11972..12313)
DNA (342bp) protein (114aa)
Putative uncharacterized protein bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
conserved protein of unknown function
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_2853_12
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12328..13725)
DNA (1398bp) protein (466aa)
Filamentation induced by cAMP protein Fic Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LWX1_DESBD
Cell division protein Fic {ECO:0000313|EMBL:KJS02586.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source="Desulfobulbaceae bacterium BRH_c16a.;"
filamentation induced by cAMP protein fic
PLM4_65_coex_sep16_scaffold_2853_13
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13845..15230)
DNA (1386bp) protein (462aa)
RND efflux system, outer membrane lipoprotein, NodT family Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E1N1_GEOLS
NodT family RND efflux system outer membrane lipoprotein
Tax=GWC2_Geobacteraceae_53_11_curated
PLM4_65_coex_sep16_scaffold_2853_14
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15238..17196)
DNA (1959bp) protein (653aa)
Macrolide export ATP-binding/permease protein MacB {ECO:0000256|HAMAP-Rule:MF_01720}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01720};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
ABC transporter related Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E1N0_GEOLS
ABC transporter
PLM4_65_coex_sep16_scaffold_2853_15
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17199..18395)
DNA (1197bp) protein (399aa)
Efflux transporter, RND family, MFP subunit Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E1M9_GEOLS
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACD94121.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
PLM4_65_coex_sep16_scaffold_2853_16
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(18392..19027)
DNA (636bp) protein (212aa)
Transcriptional regulator, TetR family Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E1M8_GEOLS
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACD94120.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
PLM4_65_coex_sep16_scaffold_2853_trna_1
unknown

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comp(19671..19758)
DNA (88bp)
transferRNA Ser
PLM4_65_coex_sep16_scaffold_2853_17
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(19804..21219)
DNA (1416bp) protein (472aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI00037EB2B1
Fis family two component sigma54 specific transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ADW13642.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM4_65_coex_sep16_scaffold_2853_18
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21206..23812)
DNA (2607bp) protein (869aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Sensor histidine kinase, PAS domain-containing Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AI30_GEOSK
sensor histidine kinase, PAS domain-containing
PLM4_65_coex_sep16_scaffold_2853_19
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24252..24581
DNA (330bp) protein (110aa)
Transposase IS204/IS1001/IS1096/IS1165 family protein bin=CD_OP8_4m species=Methanoplanus limicola genus=Methanoplanus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
transposase, IS204/IS1001/IS1096/IS1165 family protein
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_2853_20
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24693..25361)
DNA (669bp) protein (223aa)
NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase Tax=Geobacter metallireducens RepID=Q39W01_GEOMG
NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase
NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase {ECO:0000313|EMBL:ABB31573.2}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
Displaying 21 items

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