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PLM4_65_coex_sep16_scaffold_3633

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_3633_1
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..360)
DNA (360bp) protein (120aa)
Probable transcriptional regulatory protein Ppro_2673 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWD2_Desulfuromonadales_54_10_curated
PLM4_65_coex_sep16_scaffold_3633_2
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(557..2530)
DNA (1974bp) protein (658aa)
Histidine kinase bin=GWB2_Geobacter-like_52_12 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
histidine kinase
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_3633_3
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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3848..5278
DNA (1431bp) protein (477aa)
Periplasmic sensor signal transduction histidine kinase bin=GWA1_Deltaproteobacteria_52_35 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
integral membrane sensor signal transduction histidine kinase
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_3633_4
RBG_16_NC10_65_8_curated, NC10, Bacteria

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5294..5704
DNA (411bp) protein (137aa)
Response regulator receiver protein bin=GWA1_Deltaproteobacteria_52_35 species=Marvinbryantia formatexigens genus=Marvinbryantia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
response regulator receiver sensor signal transduction histidine kinase
Tax=RBG_16_NC10_65_8_curated
PLM4_65_coex_sep16_scaffold_3633_5
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5812..7605
DNA (1794bp) protein (598aa)
Predicted heterodisulfide reductase/ glutamate synthase fusion protein HdrL bin=GWC2_Pelobacter_58_13 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
4Fe-4S ferredoxin, iron-sulfur binding
Tax=RBG_13_Deltaproteobacteria_43_22_curated
PLM4_65_coex_sep16_scaffold_3633_6
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7624..8043
DNA (420bp) protein (140aa)
F420-non-reducing hydrogenase subunit D bin=GWC2_Pelobacter_58_13 species=Methanothermus fervidus genus=Methanothermus taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
methyl-viologen-reducing hydrogenase delta subunit
Tax=RBG_13_Deltaproteobacteria_52_11b_curated
PLM4_65_coex_sep16_scaffold_3633_7
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

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8142..9128
DNA (987bp) protein (329aa)
NADH ubiquinone oxidoreductase 20 kDa subunit bin=GWC2_Pelobacter_58_13 species=Archaeoglobus veneficus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
NADH ubiquinone oxidoreductase 20 kDa subunit
Tax=RBG_13_Chloroflexi_52_14_curated
PLM4_65_coex_sep16_scaffold_3633_8
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9444..9980
DNA (537bp) protein (179aa)
hydrogen dehydrogenase (EC:1.12.1.2)
Nickel-dependent hydrogenase large subunit bin=GWC2_Elusimicrobia_51_8 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
Tax=RBG_13_Deltaproteobacteria_43_22_curated
Displaying 8 items

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