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PLM4_65_coex_sep16_scaffold_3926

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_3926_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3..485)
DNA (483bp) protein (161aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Integral membrane sensor signal transduction histidine kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G966_GEOUR
integral membrane sensor signal transduction histidine kinase
PLM4_65_coex_sep16_scaffold_3926_2
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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922..2205
DNA (1284bp) protein (428aa)
NAD-dependent aldehyde dehydrogenase, CoA-acylating Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A0W4_PELCD
NAD-dependent aldehyde dehydrogenase, CoA-acylating
NAD-dependent aldehyde dehydrogenase, CoA-acylating {ECO:0000313|EMBL:ABA89993.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
PLM4_65_coex_sep16_scaffold_3926_3
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2409..3935
DNA (1527bp) protein (509aa)
Benzoate-CoA ligase family Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AUD2_PELPD
benzoate-CoA ligase family
Benzoate-CoA ligase family {ECO:0000313|EMBL:ABL00953.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
PLM4_65_coex_sep16_scaffold_3926_4
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3973..4203
DNA (231bp) protein (77aa)
Uncharacterized protein Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AT12_PELPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL00483.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
PLM4_65_coex_sep16_scaffold_3926_5
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

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4501..5676
DNA (1176bp) protein (392aa)
Amine oxidase bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
amine oxidase
Tax=GWB2_Nitrospirae_47_37_curated
PLM4_65_coex_sep16_scaffold_3926_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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5711..6580
DNA (870bp) protein (290aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GFK1_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26206.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3926_7
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6738..7385)
DNA (648bp) protein (216aa)
Hopanoid biosynthesis associated membrane protein HpnM Tax=Desulfovibrio africanus PCS RepID=M5PXQ0_DESAF
hopanoid biosynthesis associated membrane protein HpnM
Hopanoid biosynthesis associated membrane protein HpnM {ECO:0000313|EMBL:EGJ48550.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio africanus str. Walvis Bay.;"
PLM4_65_coex_sep16_scaffold_3926_8
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7476..8726)
DNA (1251bp) protein (417aa)
Major facilitator superfamily MFS_1 bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
major facilitator transporter
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_3926_9
Paenibacillus sp. P22, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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8773..10041
DNA (1269bp) protein (423aa)
Transcriptional regulator Tax=Rothia mucilaginosa (strain DY-18) RepID=D2NU15_ROTMD
Uncharacterized protein {ECO:0000313|EMBL:CDN41753.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. P22.;"
transcriptional regulator
PLM4_65_coex_sep16_scaffold_3926_10
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10118..10531)
DNA (414bp) protein (138aa)
N utilization substance protein B homolog Tax=Pelobacter propionicus (strain DSM 2379) RepID=NUSB_PELPD
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
NusB antitermination factor
PLM4_65_coex_sep16_scaffold_3926_11
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10531..10998)
DNA (468bp) protein (156aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000255|HAMAP-Rule:MF_00178}; Short=DMRL synthase {ECO:0000255|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000255|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000255|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000255|HAMAP-Rule:MF_00178};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
6,7-dimethyl-8-ribityllumazine synthase Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=RISB_GEODF
PLM4_65_coex_sep16_scaffold_3926_12
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11104..12309)
DNA (1206bp) protein (402aa)
Riboflavin biosynthesis protein RibBA Tax=Geobacter sulfurreducens RepID=D7AJC0_GEOSK
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
ribA; 3,4-dihydroxy-2-butanone-4-phosphate synthase and GTP cyclohydrolase II
PLM4_65_coex_sep16_scaffold_3926_13
Geobacter sp. M21, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12414..13064)
DNA (651bp) protein (217aa)
riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:ACT17288.1}; EC=2.5.1.9 {ECO:0000313|EMBL:ACT17288.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M21).;"
Riboflavin synthase, alpha subunit Tax=Geobacter sp. (strain M21) RepID=C6E3M3_GEOSM
PLM4_65_coex_sep16_scaffold_3926_14
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13049..14155)
DNA (1107bp) protein (369aa)
Riboflavin biosynthesis protein RibD Tax=Geobacter metallireducens RepID=Q39V69_GEOMG
ribD; 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil reductase
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_3926_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14265..14717)
DNA (453bp) protein (151aa)
Transcriptional repressor NrdR Tax=Geobacter uraniireducens (strain Rf4) RepID=NRDR_GEOUR
nrdR; transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000255|HAMAP-Rule:MF_00440}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3926_16
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14714..15184)
DNA (471bp) protein (157aa)
Deoxycytidylate deaminase Tax=Geobacter sulfurreducens RepID=D7AJB6_GEOSK
deoxycytidylate deaminase
Deoxycytidylate deaminase {ECO:0000313|EMBL:AAR35064.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
PLM4_65_coex_sep16_scaffold_3926_17
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15448..16662)
DNA (1215bp) protein (405aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosine--tRNA ligase; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
Tyrosine--tRNA ligase Tax=Geobacter sulfurreducens RepID=SYY_GEOSL
tyrS; tyrosyl-tRNA synthetase
PLM4_65_coex_sep16_scaffold_3926_18
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16751..17539)
DNA (789bp) protein (263aa)
Metallophosphoesterase Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M6E2_GEODF
metallophosphoesterase
2',3'-cyclic nucleotide 2'-phosphodiesterase {ECO:0000313|EMBL:ACM21930.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_3926_19
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(17529..17618)
DNA (90bp) protein (30aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
Ribonuclease Y Tax=Geobacter sulfurreducens RepID=RNY_GEOSL
rny; phosphodiesterase
Displaying 19 items

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