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PLM4_65_coex_sep16_scaffold_560_18

Organism: PLM4_65_coex_sep16_Deltaproteobacteria_Geobacteraceae_54_17

near complete RP 50 / 55 MC: 3 BSCG 47 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(16691..20218)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.1
  • Coverage: 1160.0
  • Bit_score: 1696
  • Evalue 0.0
Transcription-repair-coupling factor Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDJ7_GEOUR similarity UNIREF
DB: UNIREF100
  • Identity: 73.1
  • Coverage: 1160.0
  • Bit_score: 1696
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 73.1
  • Coverage: 1160.0
  • Bit_score: 1696
  • Evalue 0.0

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Taxonomy

Geobacter uraniireducens → Geobacter → Desulfuromonadales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3528
TTGCTATGCTTTTATAATCTTATCACCTGTACCACATCACTCAGACCAATGACCAGTGCCTCTACCTCAAAAATCAGGGAGATTGTCCCGCTCCTCTCCCCCCCACGTTGCCGCATCACCCTGGCAGGGCTTACCGGGTCTGCACCGGCCTATCTCCTTTCCCGGCTTCTCCCGGAGACTCCCCATCCCTTCCTGATAATCACCAAGGACCCGGAAAGCGCCGAGGAGCTGTGGCGGGAACTCCGGTTTTATGCCGGCGACGCCATGGAGGTCCTCTATTTCCCCGCATGGGACACGACCCCCATGGAGCAGGCGTCTCCCCATCCCGACATTACCGGCCGGCGGCTATACGCGCTCTTCCGGCTTATGGGGGGTAAAGTCAGGGGAGTGGTGGCCCCGCTTGCCGCCGTGCTCCAGAAGGTTCTGCCGCAAAGGCTTCTGGGCAATGTTTCCCAATACCTCGTGGCGGGTGAAGAGGTGGAGCGGGAAGCGCTCGTGGAAAAGCTTGTCAGGCTGGGGTATGCAAACGTCCCTCTTGTGGAGGACCGGGGGTCTTTTTCCGTACGCGGAGGGATCATCGACATCTTTCCCCCGGACATGCAGGCCCCGGTCAGGATCGATTTTTTCGGCGATTTCGTCGATACCATCCGCACATTCGATCCGGTCAGCCAGCGTTCCCTCAGAGCCCAGGACGAACTTATCATCCTTCCCTCTCGGGAGGTGGTCCTGACGGAAGAAGTCTTGGCCGGCTTTATTCCCCGACTGAAGGCCCACTGCGATGCCATGGAGTTTTCGCCGATCCGCCGCCGGGAACTGGTGGAGCAACTGAACTCCGCCATCTTCCCCTCCGGCATAGAATACCTCCAGCCCCTCTTCCACCCCGGCCTGGAAGAACTGTTTGACTATATGGGGTCGGCGACCGTTACGGTCATGGTCGATCCGGAAGGGATTGCCGCCGCCGGCGAAAGGTTCGGCGAAGAGCTGGAACTGGCCTGCGGGCATGCACAGGAAAAGGATATCATATTCTGCGATCGCAACGATCTCTTTATCACCATTGAACAGTTCAGCCGGCAACGCGACAGCGGCAGGCGGATCGATATCCCCTGGCTGGAACTGACAGACGGGGAGGGGGGAGAACGGACAATCCGTTTCACCGTTAGGGAGAACAGCGATCTGAAGCTAACCATATCTCCGGAAAGCGAAGGGGTGCTGCGGCCCCTTGCGGACCAGCTCTCCAAATGGCTCGCGGAAGAGCGGCGGGTGATCATGGCCTGCCATCAGAAAAGCCAGGCAGAGCGTCTTTACGAGCTCCTTTCCCATTACGGACTGCCGCTTGCCGTTTCCGAAAGGAGCTTCCCCGCCGAGCGCGGACGCCGCGACCGGCGGGTGGATATAGTCGTGGGAGAGATTTCCCGCGGGTTCCGCCTTGAAGAAGAGCTCCTCGCGGTCATTGCCGAAGAGGAGATTTTCGGGCCGCGCATCAAGCGCCGCGGTCTCACCGAGGCGCGCAAGAAGCAGATTCTCACCTCCCTGGCGGAACTTAAGCCGGGCGACCACATGGTCCACCTCGACTTCGGCGTCGGTATCTACCGGGGCCTCATGCATATGAAACTGGGGGAGGCCGAAGGGGACTTCCTTCTCCTAGAGTACGCAGGGGGGGACAAGCTCTATCTCCCCGTGGACCGGATCAACCTGGTGCAGCGTTATGTGGGGACCGAGGGAATTGAGCCGCGCGTGGACCGTCTCGGCGGGGCTGCCTGGGACAGAGCCAAGGCCAAGGCCAGGGAGGCGGTGCAGGAGATGGCGCAGGAACTCTTGCGCATCTATGCCGCCAGGGAGATCCAGGAAGGGCATCCCTTTTCGCCCCCCGACGATCTATTCCGGGAGTTCGAGGCATCATTCGCCTTCGAGGAGACCCCGGACCAGCTTTCGGCCATCGAGGATGTGCTGGCCGACATGGAGAGCAAACGGCCCATGGACCGCCTCGTCTGCGGCGATGTGGGGTACGGCAAGACCGAGGTCGCCATGCGGGCCGCGTTCAAGGCGGTCATGGACGGCAAACAGGTGGCGGTCCTGGTGCCGACCACTATCCTTGCCCAGCAGCACCAGGAGACTTTCGGGGAACGGTTCAAGGCTTATCCGGTCAAGGTGGAGGCGCTTTCACGTTTCCGCTCGGCCAGAGAGCAGAAGGTCATTCTCGAAGGGGTGAAAAAAGGGGACATTGACATCGTTATCGGCACCCACCGGCTCCTGCAGAAGGATGTCGCCTTCAAGGAGCTGGGGCTTCTCATAGTCGATGAGGAGCAGCGCTTCGGCGTGGCGCACAAGGAGAGGCTAAAACAGTTTCGTGCAATGGTCGATATCATCACTCTGACCGCCACCCCGATCCCACGAACCCTCTATATGTCGCTCATGGGAATCCGCGACCTTTCCATAATCGACACCCCGCCGGTTGACCGTCTTGTCATCAAGACCTTCGTGGCCCGCTTCAGCGATGAATTGATCCGCGAGGCGGTAATGAGGGAGCTGCGCCGCGGTGGCCAGATTTTCTTCGTCCATAACCGGGTGCAGTCCATCGCTGCCATGGCAGAGCACCTGAGCCGCATTGTTCCCGAGGCGCGGATCACCGTGGGGCACGGGCAGATGGAGGAAAAGGAGCTGGAGCGTGTAATGCTCGGCTTCATGCACGGAGAGACCAATCTCCTCTTATGCACCACCATAATCGAATCGGGTCTCGACATCCCCAACGCCAACACGCTGATCATCAACCACGCAGACGCATTCGGGCTGGCCCAGCTCTACCAGTTGCGAGGCCGGGTCGGCCGTTCCCGCCAGCGCGCCTATGCGTATTTCCTGATCCCAAGCGAAGGTGCGATCTCCTCCGAGGCGCGTGAAAGACTGAAGATTCTCCAGGATATATCCGAACTGGGGGCAGGATTCCGGATCGCCACCCACGATCTGGAGATCAGGGGGGGAGGCGATCTGCTCGGCGCTCGGCAATCGGGAAACATAGCGGCGGTCGGTTTCGAACTTTATACGGAGCTTCTGGAAGAGGCTGTAAGCGCGCTCAAGGGTGAAGAGCGGGTTGAGAGAATCGAGCCGGAAATCAAGTTGCGCATTCCAGCTTTCATCCCCGAGGATTACGTTCCGGACCCGAACCAGCGCCTGGTGATCTACAAAAAGCTGACCCAGGCTGCTTCGACGGAGGAGGTCACGGAAATCCAGGAGGAGTTGACGGACCGCTTCGGCAAACCGCCCGTGGCCGCGTCGTATCTTCTTGAAGTGATGCGGCTTCGCATCAGGTTGAAGCTTCTCCTTATCAAGGAGGTGGAATTTGACGGCAGAAGGGTGGTCATCGCCTTCCACCCTCAGACCCCGGTATCCCCGGACAGAATCATCGAACTGATCCGGCGGGAGCCGAAGAAATACCAGTTTACCCCTGAGTACCGGTTCATCCTCGAATTGAATGACACCTCATTCGACGGCATTCTGGCCGAGGTTACAAATCTCTTGAAAAGGCTGGCCTGA
PROTEIN sequence
Length: 1176
LLCFYNLITCTTSLRPMTSASTSKIREIVPLLSPPRCRITLAGLTGSAPAYLLSRLLPETPHPFLIITKDPESAEELWRELRFYAGDAMEVLYFPAWDTTPMEQASPHPDITGRRLYALFRLMGGKVRGVVAPLAAVLQKVLPQRLLGNVSQYLVAGEEVEREALVEKLVRLGYANVPLVEDRGSFSVRGGIIDIFPPDMQAPVRIDFFGDFVDTIRTFDPVSQRSLRAQDELIILPSREVVLTEEVLAGFIPRLKAHCDAMEFSPIRRRELVEQLNSAIFPSGIEYLQPLFHPGLEELFDYMGSATVTVMVDPEGIAAAGERFGEELELACGHAQEKDIIFCDRNDLFITIEQFSRQRDSGRRIDIPWLELTDGEGGERTIRFTVRENSDLKLTISPESEGVLRPLADQLSKWLAEERRVIMACHQKSQAERLYELLSHYGLPLAVSERSFPAERGRRDRRVDIVVGEISRGFRLEEELLAVIAEEEIFGPRIKRRGLTEARKKQILTSLAELKPGDHMVHLDFGVGIYRGLMHMKLGEAEGDFLLLEYAGGDKLYLPVDRINLVQRYVGTEGIEPRVDRLGGAAWDRAKAKAREAVQEMAQELLRIYAAREIQEGHPFSPPDDLFREFEASFAFEETPDQLSAIEDVLADMESKRPMDRLVCGDVGYGKTEVAMRAAFKAVMDGKQVAVLVPTTILAQQHQETFGERFKAYPVKVEALSRFRSAREQKVILEGVKKGDIDIVIGTHRLLQKDVAFKELGLLIVDEEQRFGVAHKERLKQFRAMVDIITLTATPIPRTLYMSLMGIRDLSIIDTPPVDRLVIKTFVARFSDELIREAVMRELRRGGQIFFVHNRVQSIAAMAEHLSRIVPEARITVGHGQMEEKELERVMLGFMHGETNLLLCTTIIESGLDIPNANTLIINHADAFGLAQLYQLRGRVGRSRQRAYAYFLIPSEGAISSEARERLKILQDISELGAGFRIATHDLEIRGGGDLLGARQSGNIAAVGFELYTELLEEAVSALKGEERVERIEPEIKLRIPAFIPEDYVPDPNQRLVIYKKLTQAASTEEVTEIQEELTDRFGKPPVAASYLLEVMRLRIRLKLLLIKEVEFDGRRVVIAFHPQTPVSPDRIIELIRREPKKYQFTPEYRFILELNDTSFDGILAEVTNLLKRLA*