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PLM4_65_coex_sep16_scaffold_560

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_560_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1..417
DNA (417bp) protein (139aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDG1_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ24383.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_560_2
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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781..1623
DNA (843bp) protein (281aa)
MJ0042 family finger-like protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E324_GEOLS
hypothetical protein
MJ0042 family finger-like protein {ECO:0000313|EMBL:ACD97284.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
PLM4_65_coex_sep16_scaffold_560_3
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1620..2207
DNA (588bp) protein (196aa)
Uncharacterized protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E323_GEOLS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD97283.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
PLM4_65_coex_sep16_scaffold_560_4
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

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2220..3251
DNA (1032bp) protein (344aa)
hypothetical protein Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI00035C3076
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
PLM4_65_coex_sep16_scaffold_560_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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3248..3568
DNA (321bp) protein (107aa)
Rhomboid family protein Tax=Pedosphaera parvula Ellin514 RepID=B9XGE3_9BACT
rhomboid family protein
Rhomboid family protein {ECO:0000313|EMBL:EEF60994.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_65_coex_sep16_scaffold_560_6
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3565..5211
DNA (1647bp) protein (549aa)
Uncharacterized protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E320_GEOLS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD97280.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
PLM4_65_coex_sep16_scaffold_560_7
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5195..6412
DNA (1218bp) protein (406aa)
Uncharacterized protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E319_GEOLS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD97279.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
PLM4_65_coex_sep16_scaffold_560_8
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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6492..7457
DNA (966bp) protein (322aa)
ATPase associated with various cellular activities AAA_3 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E318_GEOLS
ATPase
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:ACD97278.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
PLM4_65_coex_sep16_scaffold_560_9
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7454..8797
DNA (1344bp) protein (448aa)
Uncharacterized protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E317_GEOLS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD97277.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
PLM4_65_coex_sep16_scaffold_560_10
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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8794..9831
DNA (1038bp) protein (346aa)
Uncharacterized protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E316_GEOLS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD97276.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
PLM4_65_coex_sep16_scaffold_560_11
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

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9824..10597
DNA (774bp) protein (258aa)
RDD domain containing protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
RDD domain-containing protein
Tax=GWC2_Nitrospirae_42_7_curated
PLM4_65_coex_sep16_scaffold_560_12
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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10856..11419
DNA (564bp) protein (188aa)
Amino acid-binding ACT domain protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7N4_GEODF
amino acid-binding ACT protein
Amino acid-binding ACT domain regulatory protein {ECO:0000313|EMBL:ACM22140.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_560_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11485..11931
DNA (447bp) protein (149aa)
peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Peptide deformylase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9R0_GEOUR
PLM4_65_coex_sep16_scaffold_560_14
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12121..13527)
DNA (1407bp) protein (469aa)
Protoporphyrinogen oxidase Tax=Geobacter metallireducens RepID=Q39PR8_GEOMG
hemY; protoporphyrinogen oxidase
Protoporphyrinogen oxidase {ECO:0000313|EMBL:ABB33756.2}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_560_15
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13782..14672
DNA (891bp) protein (297aa)
DnaJ-related molecular chaperone Tax=Geobacter metallireducens RepID=Q39PR9_GEOMG
DnaJ-like molecular chaperone
DnaJ-related molecular chaperone {ECO:0000313|EMBL:ABB33755.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_560_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14676..15644)
DNA (969bp) protein (323aa)
Chaperone SurA {ECO:0000256|SAAS:SAAS00043023}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PpiC-type peptidyl-prolyl cis-trans isomerase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDH9_GEOUR
PpiC-type peptidyl-prolyl cis-trans isomerase
PLM4_65_coex_sep16_scaffold_560_17
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15713..16636)
DNA (924bp) protein (308aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
Peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type Tax=Geobacter metallireducens RepID=Q39PS1_GEOMG
peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
PLM4_65_coex_sep16_scaffold_560_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16691..20218)
DNA (3528bp) protein (1176aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Transcription-repair-coupling factor Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDJ7_GEOUR
transcription-repair coupling factor
PLM4_65_coex_sep16_scaffold_560_19
unknown

Not on your lists

comp(20759..20851)
DNA (93bp) protein (31aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_560_20
unknown

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comp(21259..21585)
DNA (327bp) protein (109aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_560_21
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

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22315..25443
DNA (3129bp) protein (1043aa)
Regulator of chromosome condensation RCC1 bin=GWC2_Nitrospirae-rel_56_14 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Cna B domain-containing protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_560_22
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

25493..25747
DNA (255bp) protein (85aa)
id=4935547 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
lipoprotein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_560_23
unknown

Not on your lists

25744..25923
DNA (180bp) protein (60aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_560_24
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25933..28470
DNA (2538bp) protein (846aa)
Putative uncharacterized protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LKT4_SYNFM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK18036.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
PLM4_65_coex_sep16_scaffold_560_25
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28862..31657
DNA (2796bp) protein (932aa)
Phosphoenolpyruvate carboxylase bin=GWC2_Geobacteraceae_55_20 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
phosphoenolpyruvate carboxylase
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_560_26
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

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comp(31813..32250)
DNA (438bp) protein (146aa)
PAS domain S-box bin=GWC2_Deltaproteobacteria_42_51 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
PAS domain S-box
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
Displaying 26 items

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