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PLM4_65_coex_sep16_scaffold_1993

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_1993_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(3..248)
DNA (246bp) protein (82aa)
tuf; elongation factor Tu bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
elongation factor Tu
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_65_coex_sep16_scaffold_1993_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(280..2391)
DNA (2112bp) protein (704aa)
Elongation factor G bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fusA-3; elongation factor G
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_1993_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(2510..2977)
DNA (468bp) protein (156aa)
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 bin=bin7_NC10_sister species=Photobacterium profundum genus=Photobacterium taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rpsG; 30S ribosomal protein S7
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_1993_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(2981..3358)
DNA (378bp) protein (126aa)
30S ribosomal protein S12 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsL; 30S ribosomal protein S12
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_1993_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(3549..7736)
DNA (4188bp) protein (1396aa)
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_1993_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7904..11911)
DNA (4008bp) protein (1336aa)
rpoB; RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_1993_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(11968..12357)
DNA (390bp) protein (130aa)
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rplL; 50S ribosomal subunit protein L7/L12
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_1993_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(12378..12965)
DNA (588bp) protein (196aa)
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
LSU ribosomal protein L10P
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 8 items

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