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PLM4_65_coex_sep16_scaffold_16356

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_16356_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(3..920)
DNA (918bp) protein (306aa)
protein translocase subunit; K03072 preprotein translocase subunit SecD bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
secD; protein-export membrane protein secD
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_16356_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(913..1260)
DNA (348bp) protein (116aa)
Preprotein translocase subunit YajC bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yajC; preprotein translocase subunit YajC
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_16356_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1346..2986)
DNA (1641bp) protein (547aa)
Dolichyl-phosphate-mannose-protein mannosyltransferase bin=GWA2_Methylomirabilis_73_35 species=Megasphaera micronuciformis genus=Megasphaera taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-amino-4-deoxy-L-arabinose transferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_16356_4
unknown

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comp(3013..3204)
DNA (192bp) protein (64aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_16356_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(3191..3619)
DNA (429bp) protein (143aa)
Queuine tRNA-ribosyltransferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
queuine tRNA ribosyltransferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_16356_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(4277..5302)
DNA (1026bp) protein (342aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_16356_7
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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5354..5584
DNA (231bp) protein (77aa)
Bacterioferritin Tax=Anaeromyxobacter sp. (strain K) RepID=B4ULJ8_ANASK
bacterioferritin
Tax=RBG_16_Acidobacteria_68_9_curated
PLM4_65_coex_sep16_scaffold_16356_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5585..6718)
DNA (1134bp) protein (378aa)
SpoIID/LytB domain protein bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
SpoIID/LytB domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_16356_9
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6715..6930)
DNA (216bp) protein (72aa)
Uncharacterized protein Tax=Geobacter metallireducens RepID=Q39XM9_GEOMG
hypothetical protein
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_16356_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6941..7843)
DNA (903bp) protein (301aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction ATP-dependent DNA helicase RuvB bin=GWC2_Methylomirabilis_70_16 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_16356_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7867..8532)
DNA (666bp) protein (222aa)
Holliday junction ATP-dependent DNA helicase RuvA bin=GWC2_Methylomirabilis_70_24 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
DNA recombination protein RuvA domain I
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_16356_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(8529..8882)
DNA (354bp) protein (118aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] bin=bin7_NC10_sister species=Rhodopirellula sp. SWK7 genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Tax=CSP1_6_Rokubacteria
PLM4_65_coex_sep16_scaffold_16356_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9016..9771)
DNA (756bp) protein (252aa)
Probable transcriptional regulatory protein DAMO_2401 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_16356_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(9781..10569)
DNA (789bp) protein (263aa)
Thioesterase superfamily protein bin=GWA2_Methylomirabilis_73_35 species=Vulcanisaeta moutnovskia genus=Vulcanisaeta taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioesterase superfamily protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Displaying 14 items

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