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PLM4_65_coex_sep16_scaffold_3667

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_3667_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3..728
DNA (726bp) protein (242aa)
Lipid A biosynthesis acyltransferase bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipid A biosynthesis acyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_3667_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

728..1363
DNA (636bp) protein (212aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_3667_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1388..1831)
DNA (444bp) protein (148aa)
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_3667_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2144..3361
DNA (1218bp) protein (406aa)
Soluble lytic murein transglycosylase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lytic transglycosylase, SLT, LysM and LysM domain-containing
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_3667_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3358..3603
DNA (246bp) protein (82aa)
ThiamineS protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
sulfur carrier protein ThiS
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_3667_trna_1
unknown

Not on your lists

3685..3778
DNA (94bp)
transferRNA SeC(p)
PLM4_65_coex_sep16_scaffold_3667_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3851..4129
DNA (279bp) protein (93aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_3667_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4137..4595
DNA (459bp) protein (153aa)
id=4163878 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_3667_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4601..4885
DNA (285bp) protein (95aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_3667_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4875..6308
DNA (1434bp) protein (478aa)
L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_3667_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6592..8493
DNA (1902bp) protein (634aa)
selenocysteine-specific translation elongation factor (EC:2.7.7.4); K03833 selenocysteine-specific elongation factor bin=bin7_NC10_sister species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
selenocysteine-specific translation elongation factor (EC:2.7.7.4)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_3667_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8538..8732
DNA (195bp) protein (65aa)
Sec-independent protein translocase protein TatA bin=GWA2_Methylomirabilis_73_35 species=Chlorobaculum parvum genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_3667_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8791..10839
DNA (2049bp) protein (683aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_3667_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10863..11738
DNA (876bp) protein (292aa)
Hypothetical membrane protein bin=GWA2_Methylomirabilis_73_35 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_3667_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11746..12363
DNA (618bp) protein (206aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_3667_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12404..15205
DNA (2802bp) protein (934aa)
ileS; isoleucine tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_3667_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

15202..15681
DNA (480bp) protein (160aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_3667_17
unknown

Not on your lists

15740..15829
DNA (90bp) protein (30aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PLM4_65_coex_sep16_scaffold_3667_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15832..16761
DNA (930bp) protein (310aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
pseudouridine synthase bin=GWC2_Methylomirabilis_70_24 species=Sporolactobacillus inulinus genus=Sporolactobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_3667_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16873..19098
DNA (2226bp) protein (742aa)
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase bin=GWC2_Methylomirabilis_70_24 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
UDP-N-acetylglucosamine pyrophosphorylase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_3667_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

19390..20814
DNA (1425bp) protein (475aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glucosamine--fructose-6-phosphate aminotransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_3667_21
GWA1_OD1_51_12, Parcubacteria, Bacteria

Not on your lists

20870..21544
DNA (675bp) protein (225aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW21681.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_51_12.;"
bifunctional deaminase-reductase domain-containing protein
Displaying 22 items

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