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PLM4_65_coex_sep16_scaffold_4405

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_4405_1
Aureococcus anophagefferens, Aureococcus, Pelagomonadales, Pelagophyceae, Eukaryota

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comp(3..410)
DNA (408bp) protein (136aa)
Putative uncharacterized protein Tax=Aureococcus anophagefferens RepID=F0Y131_AURAN
Putative uncharacterized protein {ECO:0000313|EMBL:EGB10757.1}; species="Eukaryota; Stramenopiles; Pelagophyceae; Pelagomonadales; Aureococcus.;" source="Aureococcus anophagefferens (Harmful bloom alga).;"
PLM4_65_coex_sep16_scaffold_4405_2
Aureococcus anophagefferens, Aureococcus, Pelagomonadales, Pelagophyceae, Eukaryota

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comp(419..739)
DNA (321bp) protein (107aa)
Putative uncharacterized protein Tax=Aureococcus anophagefferens RepID=F0Y131_AURAN
Putative uncharacterized protein {ECO:0000313|EMBL:EGB10757.1}; species="Eukaryota; Stramenopiles; Pelagophyceae; Pelagomonadales; Aureococcus.;" source="Aureococcus anophagefferens (Harmful bloom alga).;"
PLM4_65_coex_sep16_scaffold_4405_3
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

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1010..1255
DNA (246bp) protein (82aa)
Uncharacterized protein Tax=Thalassiosira oceanica RepID=K0RLW2_THAOC
Tax=RBG_16_Spirochaetes_49_21_curated
PLM4_65_coex_sep16_scaffold_4405_4
Acanthamoeba castellanii, Acanthamoeba, Longamoebia, Eukaryota

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1252..1626
DNA (375bp) protein (125aa)
Methyltransferase {ECO:0000256|RuleBase:RU362025}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362025};; species="Eukaryota; Amoebozoa; Discosea; Longamoebia; Centramoebida; Acanthamoebidae; Acanthamoeba.;" source="Acanthamoeba castellanii str. Neff.;"
Sterol 24c-methyltransferase Tax=Acanthamoeba castellanii str. Neff RepID=L8GNG7_ACACA
PLM4_65_coex_sep16_scaffold_4405_5
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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1595..2374
DNA (780bp) protein (260aa)
hypothetical protein Tax=alpha proteobacterium SCGC AAA015-N04 RepID=UPI000368B764
Uncharacterized protein {ECO:0000313|EMBL:ETX02825.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_4405_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(3028..4593)
DNA (1566bp) protein (522aa)
Hydrogenase, large subunit-like protein (HycE-like) Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML63_9BACT
hydrogenase, large subunit-like protein (HycE-like)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_4405_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(4590..6017)
DNA (1428bp) protein (476aa)
hyfF; hydrogenase-4 component F (EC:1.-.-.-)
Hydrogenase-4 component F Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML62_9BACT
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_4405_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(6017..6658)
DNA (642bp) protein (214aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML61_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_4405_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(6655..7596)
DNA (942bp) protein (314aa)
Similar to membrane-bound [NiFe]-hydrogenase-3, subunit D Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML60_9BACT
hycD; membrane-bound [NiFe]-hydrogenase-3, subunit D
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_4405_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7593..9503)
DNA (1911bp) protein (637aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML59_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_4405_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(9503..10027)
DNA (525bp) protein (175aa)
HycG protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML58_9BACT
hycG; hycG protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_4405_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(10024..10395)
DNA (372bp) protein (124aa)
Transcriptional regulator, ArsR family bin=GWA2_Methylomirabilis_73_35 species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ArsR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_4405_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10411..11085
DNA (675bp) protein (225aa)
Uncharacterized protein Tax=Rhodopseudomonas palustris RepID=B3QBD0_RHOPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAE25967.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
PLM4_65_coex_sep16_scaffold_4405_14
CG_Anaero_01, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

11147..11434
DNA (288bp) protein (96aa)
UPI0003CF4E28 related cluster Tax=unknown RepID=UPI0003CF4E28
hypothetical protein
Tax=CG_Anaero_01
PLM4_65_coex_sep16_scaffold_4405_15
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11485..11895)
DNA (411bp) protein (137aa)
hypothetical protein Tax=Pandoraea sp. B-6 RepID=UPI00034D7D52
amidohydrolase family protein
Amidohydrolase family protein {ECO:0000313|EMBL:AIO32981.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
PLM4_65_coex_sep16_scaffold_4405_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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12126..12503
DNA (378bp) protein (126aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWA2_Methylomirabilis_73_35 species=Streptomyces himastatinicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AtoC; response regulator
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_4405_17
unknown

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12676..12924
DNA (249bp) protein (83aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_4405_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(12966..13154)
DNA (189bp) protein (63aa)
id=3402207 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_65_coex_sep16_scaffold_4405_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13170..14585)
DNA (1416bp) protein (472aa)
Amidase (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A bin=GWC2_Methylomirabilis_70_24 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_65_coex_sep16_scaffold_4405_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14650..16083
DNA (1434bp) protein (478aa)
dihydropyrimidinase (EC:3.5.2.2)
Dihydropyrimidinase bin=GWF2_Methylomirabilis_70_14 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 20 items

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