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PLM4_65_coex_sep16_scaffold_401

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_401_trna_1
unknown

Not on your lists

64..136
DNA (73bp)
transferRNA Asn
PLM4_65_coex_sep16_scaffold_401_1
unknown

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570..1076
DNA (507bp) protein (169aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_401_2
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1004..1408)
DNA (405bp) protein (135aa)
Alcohol dehydrogenase GroES domain protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7Z9_GEODF
alcohol dehydrogenase GroES domain protein
Mannitol dehydrogenase {ECO:0000313|EMBL:ACM18457.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_401_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1650..2165)
DNA (516bp) protein (172aa)
Putative GAF sensor protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAB4_GEOUR
putative GAF sensor protein
Putative GAF sensor protein {ECO:0000313|EMBL:ABQ25483.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_401_4
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2195..3169)
DNA (975bp) protein (325aa)
Putative GAF sensor protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAB4_GEOUR
putative GAF sensor protein
Putative GAF sensor protein {ECO:0000313|EMBL:ABQ25483.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_401_5
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3428..3757
DNA (330bp) protein (110aa)
Helix-turn-helix DNA-binding protein, putative Tax=Geobacter metallireducens RepID=Q39UQ2_GEOMG
helix-turn-helix DNA-binding protein
Helix-turn-helix DNA-binding protein, putative {ECO:0000313|EMBL:ABB32022.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_401_6
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3884..4174)
DNA (291bp) protein (97aa)
plasmid stabilization protein Tax=Geopsychrobacter electrodiphilus RepID=UPI000371DE31
toxin, RelE family
Toxin, RelE family {ECO:0000313|EMBL:ABB30467.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_401_7
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4161..4430)
DNA (270bp) protein (90aa)
prevent-host-death protein Tax=Geopsychrobacter electrodiphilus RepID=UPI000360BC7F
antitoxin, Phd family
Tax=BJP_IG2157_Desulfuromonadales_56_134
PLM4_65_coex_sep16_scaffold_401_8
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4571..4855
DNA (285bp) protein (95aa)
Putative uncharacterized protein bin=GWF2_Geobacter_54_21 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ24606.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_401_9
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5050..5448)
DNA (399bp) protein (133aa)
HEPN domain protein bin=GWF2_Geobacter_54_21 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
HEPN domain-containing protein
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_401_10
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5445..5759)
DNA (315bp) protein (105aa)
DNA polymerase beta domain protein region bin=GWF2_Geobacter_54_21 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
DNA polymerase beta domain-containing protein
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_401_11
unknown

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5795..6082
DNA (288bp) protein (96aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_401_12
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6075..6419)
DNA (345bp) protein (115aa)
Uncharacterized protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E931_GEOLS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD96744.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
PLM4_65_coex_sep16_scaffold_401_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6412..6711)
DNA (300bp) protein (100aa)
DNA polymerase, beta domain protein region Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GD96_GEOUR
DNA polymerase subunit beta
DNA polymerase, beta domain protein region {ECO:0000313|EMBL:ABQ24457.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_401_14
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7308..7499
DNA (192bp) protein (64aa)
Isochorismatase hydrolase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAA9_GEOUR
isochorismatase hydrolase
Isochorismatase hydrolase {ECO:0000313|EMBL:ABQ25478.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_401_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7496..7849
DNA (354bp) protein (118aa)
Isochorismatase hydrolase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAA9_GEOUR
isochorismatase hydrolase
Isochorismatase hydrolase {ECO:0000313|EMBL:ABQ25478.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_401_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7917..8843
DNA (927bp) protein (309aa)
Protein involved in meta-pathway of phenol degradation-like protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAC7_GEOUR
meta-pathway phenol degradation-like protein
Protein involved in meta-pathway of phenol degradation-like protein {ECO:0000313|EMBL:ABQ25476.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_401_17
unknown

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8898..9101
DNA (204bp) protein (68aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_401_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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9145..9777
DNA (633bp) protein (211aa)
FMN-dependent NADH-azoreductase {ECO:0000255|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000255|HAMAP-Rule:MF_01216};; Azo-dye reductase {ECO:0000255|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase {ECO:0000255|HAMAP-Rule:MF_01216}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
FMN-dependent NADH-azoreductase Tax=Geobacter uraniireducens (strain Rf4) RepID=AZOR_GEOUR
NAD(P)H dehydrogenase (quinone)
PLM4_65_coex_sep16_scaffold_401_19
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9823..10950)
DNA (1128bp) protein (376aa)
Metal-dependent hydrolase, beta-lactamase superfamily Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q747Z3_GEOSL
metal-dependent hydrolase
Hydrolase {ECO:0000313|EMBL:AJY69361.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
PLM4_65_coex_sep16_scaffold_401_20
Pseudomonas sp. GM48, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10990..12159)
DNA (1170bp) protein (390aa)
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein Tax=Pseudomonas sp. GM48 RepID=J2SFK9_9PSED
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein {ECO:0000313|EMBL:EJM60494.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM48.;"
aldo-keto reductase
PLM4_65_coex_sep16_scaffold_401_21
Bdellovibrio bacteriovorus, Bdellovibrio, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12358..13446)
DNA (1089bp) protein (363aa)
Alpha/beta hydrolase superfamily protein Tax=Bdellovibrio bacteriovorus str. Tiberius RepID=K7ZGI3_BDEBC
alpha/beta hydrolase superfamily protein
Alpha/beta hydrolase superfamily protein {ECO:0000313|EMBL:AFY02517.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bdellovibrionaceae; Bdellovibrio.;" source="Bdellovibrio bacteriovorus str. Tiberius.;"
PLM4_65_coex_sep16_scaffold_401_22
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13647..14567
DNA (921bp) protein (307aa)
Transcriptional regulator, AraC family Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9Q0_GEOUR
AraC-like transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABQ28518.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_401_23
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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14627..15229
DNA (603bp) protein (201aa)
GCN5-related N-acetyltransferase bin=GWF2_Geobacter_54_21 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
N-acetyltransferase GCN5
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_401_24
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15289..16461)
DNA (1173bp) protein (391aa)
Aldo/keto reductase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9P4_GEOUR
aldo/keto reductase
Tax=RBG_13_Actinobacteria_63_9_curated
PLM4_65_coex_sep16_scaffold_401_25
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16484..17548)
DNA (1065bp) protein (355aa)
Alcohol dehydrogenase GroES domain protein Tax=Geobacter sp. (strain M18) RepID=E8WHI5_GEOS8
Alcohol dehydrogenase GroES domain-containing protein
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:ADW13285.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM4_65_coex_sep16_scaffold_401_26
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17731..18735)
DNA (1005bp) protein (335aa)
Aldo/keto reductase bin=GWC2_Geobacteraceae_55_20 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
aldo/keto reductase
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_401_27
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19092..19700
DNA (609bp) protein (203aa)
Transcriptional regulator, AraC family Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9Q0_GEOUR
AraC-like transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABQ28518.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_401_28
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20655..22037
DNA (1383bp) protein (461aa)
OmpA/MotB domain-containing protein
OmpA/MotB domain protein {ECO:0000313|EMBL:ABQ28476.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
OmpA/MotB domain protein bin=GWD2_Desulfuromonadales_54_10 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
PLM4_65_coex_sep16_scaffold_401_29
unknown

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22479..22598
DNA (120bp) protein (40aa)

This feature has no annotations

Displaying items 1-30 of 62 in total

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