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PLM4_65_coex_sep16_scaffold_1020

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_1020_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1..189
DNA (189bp) protein (63aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GE30_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25685.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1020_2
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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385..927
DNA (543bp) protein (181aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GEG7_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25822.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1020_3
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(960..2030)
DNA (1071bp) protein (357aa)
Twitching mobility protein {ECO:0000313|EMBL:GAM09531.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Twitching motility protein bin=GWC2_Geobacteraceae_55_20 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
twitching motility protein
PLM4_65_coex_sep16_scaffold_1020_4
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2066..3853)
DNA (1788bp) protein (596aa)
Response regulator receiver protein bin=GWB2_Geobacter-like_52_12 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
response regulator receiver protein
Tax=GWB2_Geobacteraceae_52_12_curated
PLM4_65_coex_sep16_scaffold_1020_5
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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4109..5746
DNA (1638bp) protein (546aa)
ABC transporter related protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5Q3_GEOUR
ABC transporter-like protein
ABC transporter related protein {ECO:0000313|EMBL:ABQ27121.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1020_6
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5844..6104)
DNA (261bp) protein (87aa)
Plasmid stabilization system Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M8M4_GEODF
plasmid stabilization system
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
PLM4_65_coex_sep16_scaffold_1020_7
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6091..6324)
DNA (234bp) protein (78aa)
Uncharacterized protein bin=GWB2_Pelobacter_53_15 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWC2_Geobacteraceae_53_11_curated
PLM4_65_coex_sep16_scaffold_1020_8
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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6540..6902
DNA (363bp) protein (121aa)
Uncharacterized protein Tax=Geobacter metallireducens RepID=Q39Z63_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB30461.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_1020_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7176..7406
DNA (231bp) protein (77aa)
Uncharacterized protein Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQP1_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU99015.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
PLM4_65_coex_sep16_scaffold_1020_10
Desulfonatronospira thiodismutans, Desulfonatronospira, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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7403..7852
DNA (450bp) protein (150aa)
Uncharacterized protein Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SN21_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EFI36082.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfohalobiaceae; Desulfonatronospira.;" source="Desulfonatronospira thiodismutans ASO3-1.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_1020_11
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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7966..8205
DNA (240bp) protein (80aa)
Prevent-host-death family protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G458_GEOUR
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:ABQ26576.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1020_12
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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8192..8587
DNA (396bp) protein (132aa)
PilT protein domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G459_GEOUR
PilT domain-containing protein
PilT protein domain protein {ECO:0000313|EMBL:ABQ26577.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1020_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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8821..9591
DNA (771bp) protein (257aa)
30S ribosomal protein S2 Tax=Geobacter uraniireducens (strain Rf4) RepID=RS2_GEOUR
rpsB; 30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000255|HAMAP-Rule:MF_00291}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1020_14
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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9678..10328
DNA (651bp) protein (217aa)
Elongation factor Ts Tax=Geobacter uraniireducens (strain Rf4) RepID=EFTS_GEOUR
tsf; elongation factor Ts
Elongation factor Ts {ECO:0000255|HAMAP-Rule:MF_00050}; Short=EF-Ts {ECO:0000255|HAMAP-Rule:MF_00050};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1020_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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10431..11150
DNA (720bp) protein (240aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Uridylate kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7W6_GEOUR
pyrH; uridylate kinase
PLM4_65_coex_sep16_scaffold_1020_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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11152..11709
DNA (558bp) protein (186aa)
Ribosome-recycling factor Tax=Geobacter uraniireducens (strain Rf4) RepID=RRF_GEOUR
frr; ribosome recycling factor
Ribosome-recycling factor {ECO:0000255|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000255|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000255|HAMAP-Rule:MF_00040}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1020_17
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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11713..12639
DNA (927bp) protein (309aa)
undecaprenyl pyrophosphate synthase (EC:2.5.1.31)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Isoprenyl transferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7W4_GEOUR
PLM4_65_coex_sep16_scaffold_1020_18
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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12790..13548
DNA (759bp) protein (253aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
Phosphatidate cytidylyltransferase Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M5C1_GEODF
phosphatidate cytidylyltransferase
PLM4_65_coex_sep16_scaffold_1020_19
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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13591..14751
DNA (1161bp) protein (387aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00183}; Short=DXP reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000255|HAMAP-Rule:MF_00183};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00183}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase Tax=Geobacter uraniireducens (strain Rf4) RepID=DXR_GEOUR
PLM4_65_coex_sep16_scaffold_1020_20
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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14836..15903
DNA (1068bp) protein (356aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Site-2 protease, Metallo peptidase, MEROPS family M50B Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7W1_GEOUR
putative membrane-associated zinc metalloprotease
PLM4_65_coex_sep16_scaffold_1020_21
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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15907..16638
DNA (732bp) protein (244aa)
Peptidase M22, glycoprotease Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7W0_GEOUR
peptidase M22, glycoprotease
Peptidase M22, glycoprotease {ECO:0000313|EMBL:ABQ27878.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1020_22
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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16721..18382
DNA (1662bp) protein (554aa)
Dihydroxy-acid dehydratase {ECO:0000255|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000255|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000255|HAMAP-Rule:MF_00012};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase Tax=Geobacter uraniireducens (strain Rf4) RepID=ILVD_GEOUR
PLM4_65_coex_sep16_scaffold_1020_23
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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18484..18597
DNA (114bp) protein (38aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Acetolactate synthase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7V5_GEOUR
acetolactate synthase, large subunit type
Displaying 23 items

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