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PLM4_65_coex_sep16_scaffold_1739

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_1739_1
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3..668
DNA (666bp) protein (222aa)
formate dehydrogenase (EC:1.2.1.2); K08352 thiosulfate reductase [EC:1.-.-.-] bin=bin5_DeltaP species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
formate dehydrogenase (EC:1.2.1.2)
Polysulfide reductase chain A {ECO:0000313|EMBL:GAM09329.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
PLM4_65_coex_sep16_scaffold_1739_2
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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672..1829
DNA (1158bp) protein (386aa)
Hdr-like menaquinol oxidoreductase integral membrane subunit {ECO:0000313|EMBL:GAM09328.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Polysulphide reductase NrfD bin=GWB2_Pelobacter_53_15 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
Polysulfide reductase NrfD
PLM4_65_coex_sep16_scaffold_1739_3
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1832..2548
DNA (717bp) protein (239aa)
Tetrathionate reductase subunit B {ECO:0000313|EMBL:GAM09327.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Putative molybdopterin oxidoreductase iron-sulfur binding subunit bin=GWD2_Desulfuromonadales_54_10 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
putative molybdopterin oxidoreductase iron-sulfur binding subunit
PLM4_65_coex_sep16_scaffold_1739_4
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2681..2959
DNA (279bp) protein (93aa)
Uncharacterized protein Tax=Geobacter metallireducens RepID=J7M0B9_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFR42852.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_1739_5
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3024..3308)
DNA (285bp) protein (95aa)
Helix-turn-helix domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GA29_GEOUR
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ABQ25559.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1739_6
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3312..3626)
DNA (315bp) protein (105aa)
Uncharacterized protein Tax=Smithella sp. ME-1 RepID=V4GU28_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ESP62942.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. ME-1.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_1739_7
unknown

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4429..4554
DNA (126bp) protein (42aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1739_8
CG_Arma_01, Armatimonadetes, Bacteria

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4547..6538
DNA (1992bp) protein (664aa)
Putative uncharacterized protein Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J1X7_DESRM
hypothetical protein
Tax=CG_Arma_01
PLM4_65_coex_sep16_scaffold_1739_9
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

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6535..7545
DNA (1011bp) protein (337aa)
CRISPR-associated protein, Csh2 family Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J1X8_DESRM
CRISPR-associated protein Csh2 {ECO:0000313|EMBL:KJS49403.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
CRISPR-associated Csh2 family protein
PLM4_65_coex_sep16_scaffold_1739_10
CG_Arma_01, Armatimonadetes, Bacteria

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7542..8276
DNA (735bp) protein (245aa)
CRISPR-associated protein, Cas5h family Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J1X9_DESRM
CRISPR-associated Cas5 family Hmari subtype protein
Tax=CG_Arma_01
PLM4_65_coex_sep16_scaffold_1739_11
CG_Arma_01, Armatimonadetes, Bacteria

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8273..10564
DNA (2292bp) protein (764aa)
CRISPR-associated helicase, Cas3 family Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J1Y0_DESRM
CRISPR-associated helicase Cas3
Tax=CG_Arma_01
PLM4_65_coex_sep16_scaffold_1739_12
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

10561..11229
DNA (669bp) protein (223aa)
Uncharacterized protein Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E7U5_9GAMM
hypothetical protein
Tax=CG_Arma_01
PLM4_65_coex_sep16_scaffold_1739_13
CG_Nitrosp_02, Nitrospirae, Bacteria

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11362..12345
DNA (984bp) protein (328aa)
hypothetical protein Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000376A06E
cas1; crispr-associated protein Cas1
Tax=CG_Nitrosp_02
PLM4_65_coex_sep16_scaffold_1739_14
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

12339..12629
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 Tax=planctomycete KSU-1 RepID=I3IHM2_9PLAN
CRISPR-associated Cas2 family protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_65_coex_sep16_scaffold_1739_15
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

12626..13225
DNA (600bp) protein (200aa)
hypothetical protein Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI0003602CF5
CRISPR-associated RecB family exonuclease Cas4b
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_65_coex_sep16_scaffold_1739_16
Desulfobacula toluolica, Desulfobacula, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14627..15496)
DNA (870bp) protein (290aa)
Uncharacterized protein Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NM65_DESTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK81118.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacula.;" source="Desulfobacula toluolica (strain DSM 7467 / Tol2).;"
PLM4_65_coex_sep16_scaffold_1739_17
unknown

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comp(15524..16027)
DNA (504bp) protein (168aa)
hypothetical protein
PLM4_65_coex_sep16_scaffold_1739_18
unknown

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comp(16309..16662)
DNA (354bp) protein (118aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1739_19
unknown

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comp(16678..17268)
DNA (591bp) protein (197aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1739_20
unknown

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comp(17256..18095)
DNA (840bp) protein (280aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1739_21
unknown

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comp(18202..19011)
DNA (810bp) protein (270aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1739_22
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19054..19401)
DNA (348bp) protein (116aa)
Putative uncharacterized protein bin=GWC2_Pelobacter_58_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWC2_Pelobacteraceae_58_13_curated
PLM4_65_coex_sep16_scaffold_1739_23
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19417..20784)
DNA (1368bp) protein (456aa)
Thiosulfate sulfurtransferase GlpE {ECO:0000313|EMBL:GAM09324.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Rhodanese domain protein bin=GWF2_Syntrophobacterales_56_9 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
Rhodanese domain-containing protein
PLM4_65_coex_sep16_scaffold_1739_24
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20934..22814
DNA (1881bp) protein (627aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GCL7_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ24671.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1739_25
unknown

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22777..22836
DNA (60bp) protein (20aa)

This feature has no annotations

Displaying 25 items

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