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PLM4_65_coex_sep16_scaffold_1908

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_1908_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2..964)
DNA (963bp) protein (321aa)
Thiamine biosynthesis protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9E7_GEOUR
thiamine biosynthesis protein
Thiamine biosynthesis protein {ECO:0000313|EMBL:ABQ28415.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1908_2
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1249..1869
DNA (621bp) protein (207aa)
General secretory system II protein E domain protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LZ77_GEODF
General secretory system II protein E domain-containing protein
PilB/PulE/GspE family ATPase {ECO:0000313|EMBL:ACM18809.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_1908_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1842..2894
DNA (1053bp) protein (351aa)
General secretory system II, protein E domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9E8_GEOUR
general secretion pathway protein E
General secretory system II, protein E domain protein {ECO:0000313|EMBL:ABQ28416.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1908_4
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2911..3981
DNA (1071bp) protein (357aa)
Twitching mobility protein {ECO:0000313|EMBL:GAM11267.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Pilus retraction ATPase PilT bin=GWF2_Geobacter_54_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
twitching motility protein
PLM4_65_coex_sep16_scaffold_1908_5
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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4064..4381
DNA (318bp) protein (106aa)
CopG domain protein DNA-binding domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBK4_GEOUR
CopG/DNA-binding domain-containing protein
CopG domain protein DNA-binding domain protein {ECO:0000313|EMBL:ABQ25041.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1908_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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4381..4722
DNA (342bp) protein (114aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
mRNA interferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBK3_GEOUR
transcriptional modulator of MazE/toxin MazF
PLM4_65_coex_sep16_scaffold_1908_7
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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4768..5550
DNA (783bp) protein (261aa)
DNA topoisomerase, type IA, zn finger domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3C3_GEOUR
DNA topoisomerase type IA Zn finger domain-containing protein
Tax=GWD2_Desulfuromonadales_61_12_curated
PLM4_65_coex_sep16_scaffold_1908_8
unknown

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5772..5885
DNA (114bp) protein (38aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1908_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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6229..6576
DNA (348bp) protein (116aa)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
PLM4_65_coex_sep16_scaffold_1908_10
unknown

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6719..6844
DNA (126bp) protein (42aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1908_11
unknown

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6946..7449
DNA (504bp) protein (168aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1908_12
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7577..10489
DNA (2913bp) protein (971aa)
Uncharacterized protein Tax=Bradyrhizobium sp. STM 3809 RepID=H0SWW2_9BRAD
hypothetical protein
Tax=GWC2_Geobacteraceae_53_11_curated
PLM4_65_coex_sep16_scaffold_1908_13
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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10492..12012
DNA (1521bp) protein (507aa)
Uncharacterized protein Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YN01_BRASO
metallo-dependent phosphatase
Tax=GWC2_Geobacteraceae_53_11_curated
PLM4_65_coex_sep16_scaffold_1908_14
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12060..12758)
DNA (699bp) protein (233aa)
Response regulator receiver modulated PilZ sensor protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBB4_GEOUR
response regulator receiver modulated PilZ sensor protein
Response regulator receiver modulated PilZ sensor protein {ECO:0000313|EMBL:ABQ25132.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1908_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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13208..14149
DNA (942bp) protein (314aa)
Response regulator receiver modulated diguanylate cyclase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDD2_GEOUR
response regulator receiver modulated diguanylate cyclase
Response regulator receiver modulated diguanylate cyclase {ECO:0000313|EMBL:ABQ24411.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1908_trna_1
unknown

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comp(14670..14743)
DNA (74bp)
transferRNA Pro
PLM4_65_coex_sep16_scaffold_1908_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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14958..16343
DNA (1386bp) protein (462aa)
3-octaprenyl-4hydroxybenzoate decarboxylase {ECO:0000313|EMBL:ABQ28424.1}; EC=4.1.1.- {ECO:0000313|EMBL:ABQ28424.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
3-octaprenyl-4hydroxybenzoate decarboxylase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9F6_GEOUR
UbiD family decarboxylase
PLM4_65_coex_sep16_scaffold_1908_17
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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16369..17241
DNA (873bp) protein (291aa)
4-hydroxybenzoate polyprenyltransferase, putative Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9F7_GEOUR
ubiA; prenyltransferase
4-hydroxybenzoate polyprenyltransferase, putative {ECO:0000313|EMBL:ABQ28425.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1908_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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17238..17843
DNA (606bp) protein (202aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9F8_GEOUR
3-octaprenyl-4-hydroxybenzoate carboxy-lyase
PLM4_65_coex_sep16_scaffold_1908_19
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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17873..18955
DNA (1083bp) protein (361aa)
Aminodeoxyfutalosine synthase {ECO:0000256|HAMAP-Rule:MF_00993}; Short=AFL synthase {ECO:0000256|HAMAP-Rule:MF_00993};; Short=Aminofutalosine synthase {ECO:0000256|HAMAP-Rule:MF_00993};; EC=2.5.1.120 {ECO:0000256|HAMAP-Rule:MF_00993};; Menaquinone biosynthetic enzyme MqnE {ECO:0000256|HAMAP-Rule:MF_00993}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Radical SAM domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9F9_GEOUR
radical SAM domain-containing protein
PLM4_65_coex_sep16_scaffold_1908_20
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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19052..20116
DNA (1065bp) protein (355aa)
Cyclic dehypoxanthine futalosine synthase {ECO:0000256|HAMAP-Rule:MF_00992}; Short=Cyclic DHFL synthase {ECO:0000256|HAMAP-Rule:MF_00992};; EC=1.21.98.1 {ECO:0000256|HAMAP-Rule:MF_00992};; Dehypoxanthine futalosine cyclase {ECO:0000256|HAMAP-Rule:MF_00992}; Menaquinone biosynthetic enzyme MqnC {ECO:0000256|HAMAP-Rule:MF_00992}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Radical SAM domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9G0_GEOUR
radical SAM domain-containing protein
PLM4_65_coex_sep16_scaffold_1908_21
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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20170..21213
DNA (1044bp) protein (348aa)
Histidinol-phosphate aminotransferase {ECO:0000255|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000255|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000255|HAMAP-Rule:MF_01023}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Histidinol-phosphate aminotransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=HIS8_GEOUR
histidinol-phosphate aminotransferase
PLM4_65_coex_sep16_scaffold_1908_22
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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21281..22441
DNA (1161bp) protein (387aa)
3'-5' exonuclease Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9G2_GEOUR
3'-5' exonuclease
3'-5' exonuclease {ECO:0000313|EMBL:ABQ28430.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1908_23
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(22479..23219)
DNA (741bp) protein (247aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Ribosomal RNA small subunit methyltransferase E Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9G4_GEOUR
16S ribosomal RNA methyltransferase RsmE
PLM4_65_coex_sep16_scaffold_1908_24
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(23220..24167)
DNA (948bp) protein (316aa)
Ribosomal protein L11 methyltransferase {ECO:0000255|HAMAP-Rule:MF_00735}; Short=L11 Mtase {ECO:0000255|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000255|HAMAP-Rule:MF_00735};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Ribosomal protein L11 methyltransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=PRMA_GEOUR
50S ribosomal protein L11 methyltransferase
PLM4_65_coex_sep16_scaffold_1908_25
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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24309..25469
DNA (1161bp) protein (387aa)
Amidohydrolase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9G6_GEOUR
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ABQ28434.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1908_26
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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25579..26388
DNA (810bp) protein (270aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000255|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000255|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000255|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000255|HAMAP-Rule:MF_00921};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Putative pyruvate, phosphate dikinase regulatory protein Tax=Geobacter uraniireducens (strain Rf4) RepID=PDRP_GEOUR
hypothetical protein
PLM4_65_coex_sep16_scaffold_1908_27
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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26456..27130
DNA (675bp) protein (225aa)
Two component transcriptional regulator, winged helix family Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9G8_GEOUR
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABQ28436.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1908_28
unknown

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comp(27131..27202)
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 29 items

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