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PLM4_65_coex_sep16_scaffold_2017

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2017_1
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1..300
DNA (300bp) protein (100aa)
Molybdate ABC transporter, membrane protein, putative Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A801_PELCD
modB-3; molybdate ABC transporter permease
Molybdate ABC transporter, membrane protein, putative {ECO:0000313|EMBL:ABA87491.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
PLM4_65_coex_sep16_scaffold_2017_2
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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266..925
DNA (660bp) protein (220aa)
ABC transporter related protein Tax=Thermincola potens (strain JR) RepID=D5XCE3_THEPJ
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADG81569.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
PLM4_65_coex_sep16_scaffold_2017_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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954..1337
DNA (384bp) protein (128aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GCS9_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ24618.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2017_4
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1350..1616)
DNA (267bp) protein (89aa)
Uncharacterized protein Tax=Geobacter sulfurreducens RepID=D7AGN4_GEOSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJY70512.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
PLM4_65_coex_sep16_scaffold_2017_5
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1785..3242
DNA (1458bp) protein (486aa)
Helix-turn-helix transcriptional regulator with aminotransferase domain, GntR family Tax=Geobacter sulfurreducens RepID=D7ALV4_GEOSK
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:AJY69734.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
PLM4_65_coex_sep16_scaffold_2017_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3428..3835
DNA (408bp) protein (136aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GCS8_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ24617.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2017_7
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3862..4446)
DNA (585bp) protein (195aa)
Peptidase M23B Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GCS7_GEOUR
peptidase M23B
Peptidase M23B {ECO:0000313|EMBL:ABQ24616.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2017_8
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4573..5361)
DNA (789bp) protein (263aa)
Lipoyl synthase {ECO:0000255|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000255|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000255|HAMAP-Rule:MF_00206}; Short=LS {ECO:0000255|HAMAP-Rule:MF_00206};; Lipoate synthase {ECO:0000255|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000255|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000255|HAMAP-Rule:MF_00206}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Lipoyl synthase Tax=Geobacter uraniireducens (strain Rf4) RepID=LIPA_GEOUR
lipoyl synthase
PLM4_65_coex_sep16_scaffold_2017_9
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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5669..7678
DNA (2010bp) protein (670aa)
Cytochrome C family protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GCS5_GEOUR
cytochrome C family protein
Cytochrome C family protein {ECO:0000313|EMBL:ABQ24614.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2017_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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7729..8091
DNA (363bp) protein (121aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GCU3_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ24613.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2017_11
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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8355..9674
DNA (1320bp) protein (440aa)
ATPase bin=GWC2_Pelobacter_58_13 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
dexx-box atpase
Tax=GWC2_Geobacteraceae_53_11_curated
PLM4_65_coex_sep16_scaffold_2017_12
unknown

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comp(11121..11258)
DNA (138bp) protein (46aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2017_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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11589..12032
DNA (444bp) protein (148aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GB98_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25154.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2017_14
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12133..12996)
DNA (864bp) protein (288aa)
Biotin/lipoate A/B protein ligase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GCU2_GEOUR
biotin/lipoate A/B protein ligase
Biotin/lipoate A/B protein ligase {ECO:0000313|EMBL:ABQ24612.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2017_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13014..13484)
DNA (471bp) protein (157aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GCU1_GEOUR
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ABQ24611.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2017_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13506..13724)
DNA (219bp) protein (73aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Acetate kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GCU0_GEOUR
acetate kinase
Displaying 16 items

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