ggKbase home page

PLM4_65_coex_sep16_scaffold_2171

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2171_1
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(146..931)
DNA (786bp) protein (262aa)
Uncharacterized protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M2M1_GEODF
hypothetical protein
Transposase, Y1_Tnp domain-containing {ECO:0000313|EMBL:ACM19400.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_2171_2
unknown

Not on your lists

944..1126
DNA (183bp) protein (61aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2171_3
unknown

Not on your lists

comp(1510..1716)
DNA (207bp) protein (69aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2171_4
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1822..2862)
DNA (1041bp) protein (347aa)
RNA-3'-phosphate cyclase (EC:6.5.1.4)
RNA 3'-terminal phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200}; Short=RNA cyclase {ECO:0000256|HAMAP-Rule:MF_00200};; Short=RNA-3'-phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200};; EC=6.5.1.4 {ECO:0000256|HAMAP-Rule:MF_00200};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
RNA 3'-terminal phosphate cyclase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GEK5_GEOUR
PLM4_65_coex_sep16_scaffold_2171_5
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2911..3183)
DNA (273bp) protein (91aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GEK2_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25857.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2171_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3276..3896)
DNA (621bp) protein (207aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GEK1_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25856.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2171_7

Not on your lists

comp(3921..4244)
DNA (324bp) protein (108aa)
Putative membrane protein Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PEZ6_DESSD
Marine sediment metagenome DNA, contig: S06H3_C04372 {ECO:0000313|EMBL:GAI17602.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_2171_8
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4241..4975)
DNA (735bp) protein (245aa)
AzlC family protein Tax=Geobacter sulfurreducens RepID=D7AGN1_GEOSK
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KIE43126.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
AzlC family protein
PLM4_65_coex_sep16_scaffold_2171_9
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4972..5199)
DNA (228bp) protein (76aa)
Uncharacterized protein bin=GWF2_Geobacter_54_21 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
PLM4_65_coex_sep16_scaffold_2171_10
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5486..7111
DNA (1626bp) protein (542aa)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit bin=GWB2_Pelobacter_53_15 species=unknown genus=unknown taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_2171_11
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7325..7792)
DNA (468bp) protein (156aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GD68_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ24471.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2171_12
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7823..8131)
DNA (309bp) protein (103aa)
Uncharacterized protein Tax=Geobacter sp. (strain M21) RepID=C6E939_GEOSM
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
PLM4_65_coex_sep16_scaffold_2171_13
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8588..10075)
DNA (1488bp) protein (496aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM10193.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
id=4719065 bin=GWC2_CP_Nitrospirae-rel_42_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
PLM4_65_coex_sep16_scaffold_2171_14
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10312..10917
DNA (606bp) protein (202aa)
Nicotinamidase Tax=Geobacter metallireducens RepID=Q39T25_GEOMG
nicotinamidase
Nicotinamidase {ECO:0000313|EMBL:AJE03739.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_2171_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11031..12098
DNA (1068bp) protein (356aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GES7_GEOUR
Displaying 15 items

View Taxonomy