ggKbase home page

PLM4_65_coex_sep16_scaffold_2651

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2651_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..2343
DNA (2343bp) protein (781aa)
Aconitate hydratase B {ECO:0000256|PIRNR:PIRNR036687}; EC=4.2.1.3 {ECO:0000256|PIRNR:PIRNR036687};; EC=4.2.1.99 {ECO:0000256|PIRNR:PIRNR036687};; 2-methylisocitrate dehydratase {ECO:0000256|PIRNR:PIRNR036687}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (EC:4.2.1.3)
Aconitate hydratase 2 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GFC4_GEOUR
PLM4_65_coex_sep16_scaffold_2651_2
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2641..2802
DNA (162bp) protein (54aa)
Uncharacterized protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E8M6_GEOLS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD96702.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
PLM4_65_coex_sep16_scaffold_2651_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2834..3700
DNA (867bp) protein (289aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GEE7_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25802.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2651_4
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3794..4426)
DNA (633bp) protein (211aa)
Metal-dependent phosphohydrolase, putative Tax=Geobacter metallireducens RepID=Q39WM7_GEOMG
metal-dependent phosphohydrolase
Metal-dependent phosphohydrolase, putative {ECO:0000313|EMBL:ABB31347.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_2651_5
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4526..5233
DNA (708bp) protein (236aa)
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase 3 Tax=Geobacter uraniireducens (strain Rf4) RepID=PIMT3_GEOUR
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_2651_6
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5238..7607)
DNA (2370bp) protein (790aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6R9_GEOUR
hypothetical protein
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_2651_7
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7675..8202
DNA (528bp) protein (176aa)
Uncharacterized protein Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ASW5_PELPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL00436.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
PLM4_65_coex_sep16_scaffold_2651_8
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8249..8923
DNA (675bp) protein (225aa)
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase 1 {ECO:0000255|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000255|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase 1 {ECO:0000255|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase 1 {ECO:0000255|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase 1 {ECO:0000255|HAMAP-Rule:MF_00090}; Short=PIMT 1 {ECO:0000255|HAMAP-Rule:MF_00090};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Protein-L-isoaspartate O-methyltransferase 1 Tax=Geobacter uraniireducens (strain Rf4) RepID=PIMT1_GEOUR
PLM4_65_coex_sep16_scaffold_2651_9
unknown

Not on your lists

9262..9555
DNA (294bp) protein (98aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2651_10
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9937..10899
DNA (963bp) protein (321aa)
Abi family protein bin=GWB2_Pelobacter_53_15 species=Citreicella sp. SE45 genus=Citreicella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
abortive infection bacteriophage resistance protein
Tax=GWD2_Desulfuromonadales_54_10_curated
PLM4_65_coex_sep16_scaffold_2651_11
Chlorobaculum tepidum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

11339..12868
DNA (1530bp) protein (510aa)
DNA helicase, putative Tax=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) RepID=Q8KC08_CHLTE
DNA helicase
DNA helicase, putative {ECO:0000313|EMBL:AAM72847.1}; species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 /; TLS).;"
PLM4_65_coex_sep16_scaffold_2651_12
Thiorhodovibrio sp. 970, Thiorhodovibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12871..13446
DNA (576bp) protein (192aa)
Uncharacterized protein Tax=Thiorhodovibrio sp. 970 RepID=H8Z2T8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIC21674.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodovibrio.;" source="Thiorhodovibrio sp. 970.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_2651_trna_2
unknown

Not on your lists

comp(13829..13912)
DNA (84bp)
transferRNA Leu
PLM4_65_coex_sep16_scaffold_2651_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13999..14562)
DNA (564bp) protein (188aa)
Outer membrane lipoprotein Slp Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G379_GEOUR
outer membrane lipoprotein Slp
Outer membrane lipoprotein Slp {ECO:0000313|EMBL:ABQ26247.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2651_14
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14684..15181)
DNA (498bp) protein (166aa)
Ferritin-like domain protein Tax=Geobacter metallireducens RepID=Q39UB7_GEOMG
ferritin
Ferritin {ECO:0000313|EMBL:AJE03189.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_2651_trna_1
unknown

Not on your lists

comp(15382..15465)
DNA (84bp)
transferRNA Leu
PLM4_65_coex_sep16_scaffold_2651_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15574..15978)
DNA (405bp) protein (135aa)
Protein translocase subunit secG Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G380_GEOUR
secG; preprotein translocase subunit SecG
Protein translocase subunit secG {ECO:0000313|EMBL:ABQ26248.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2651_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16042..16797)
DNA (756bp) protein (252aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00147}; Short=TIM {ECO:0000255|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000255|HAMAP-Rule:MF_00147};; Triose-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00147}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Triosephosphate isomerase Tax=Geobacter uraniireducens (strain Rf4) RepID=TPIS_GEOUR
PLM4_65_coex_sep16_scaffold_2651_17
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16822..17487)
DNA (666bp) protein (222aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000255|HAMAP-Rule:MF_00145}; EC=2.7.2.3 {ECO:0000255|HAMAP-Rule:MF_00145};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Phosphoglycerate kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=PGK_GEOUR
Displaying 19 items

View Taxonomy