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PLM4_65_coex_sep16_scaffold_5471

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_5471_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2..949)
DNA (948bp) protein (316aa)
Cobalamin (Vitamin B12) biosynthesis CbiG protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDT1_GEOUR
cobalamin (vitamin B12) biosynthesis protein CbiG
Cobalamin (Vitamin B12) biosynthesis CbiG protein {ECO:0000313|EMBL:ABQ24258.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_5471_2
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(969..1760)
DNA (792bp) protein (264aa)
precorrin-4 C(11)-methyltransferase (EC:2.1.1.133)
Precorrin-4 C11-methyltransferase {ECO:0000313|EMBL:ABQ24257.1}; EC=2.1.1.133 {ECO:0000313|EMBL:ABQ24257.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Precorrin-4 C11-methyltransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDT0_GEOUR
PLM4_65_coex_sep16_scaffold_5471_3
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1760..2020)
DNA (261bp) protein (87aa)
type III site-specific deoxyribonuclease (EC:3.1.21.5)
Type III restriction enzyme, res subunit bin=GWF2_Geobacter_54_21 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_5471_4
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2061..2429)
DNA (369bp) protein (123aa)
Uncharacterized protein bin=GWF2_Geobacter_54_21 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_5471_5
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2419..2712)
DNA (294bp) protein (98aa)
Putative nucleotidyltransferase bin=GWF2_Geobacter_54_21 species=Methylomicrobium album genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
DNA polymerase beta domain-containing protein
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_5471_6
unknown

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comp(2724..2855)
DNA (132bp) protein (44aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_5471_7
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

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comp(2852..4783)
DNA (1932bp) protein (644aa)
adenine-specific DNA-methyltransferase (EC:2.1.1.72)
Site-specific DNA-methyltransferase (Adenine-specific) Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K2R2_DEHLB
Tax=GWC2_Nitrospirae_57_13_curated
PLM4_65_coex_sep16_scaffold_5471_8
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4963..5595)
DNA (633bp) protein (211aa)
Putative uncharacterized protein bin=GWF2_Lentisphaerae_49_21 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
PLM4_65_coex_sep16_scaffold_5471_9
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5618..6475)
DNA (858bp) protein (286aa)
Cobalt-factor II C20-methyltransferase {ECO:0000313|EMBL:ABQ24254.1}; EC=2.1.1.151 {ECO:0000313|EMBL:ABQ24254.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Cobalt-factor II C20-methyltransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDU7_GEOUR
precorrin-2 C(20)-methyltransferase
PLM4_65_coex_sep16_scaffold_5471_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6592..7350)
DNA (759bp) protein (253aa)
Precorrin-6Y C5,15-methyltransferase (Decarboxylating) {ECO:0000313|EMBL:ABQ24253.1}; EC=2.1.1.132 {ECO:0000313|EMBL:ABQ24253.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Precorrin-6Y C5,15-methyltransferase (Decarboxylating) Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDU6_GEOUR
precorrin-6y C5,15-methyltransferase subuit CbiE
PLM4_65_coex_sep16_scaffold_5471_11
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7307..7729)
DNA (423bp) protein (141aa)
Precorrin-6Y C5,15-methyltransferase (Decarboxylating) {ECO:0000313|EMBL:ABQ24253.1}; EC=2.1.1.132 {ECO:0000313|EMBL:ABQ24253.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Precorrin-6Y C5,15-methyltransferase (Decarboxylating) Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDU6_GEOUR
precorrin-6y C5,15-methyltransferase subuit CbiE
PLM4_65_coex_sep16_scaffold_5471_12
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7797..8954)
DNA (1158bp) protein (386aa)
Cobalt-precorrin-5B C(1)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00787}; EC=2.1.1.195 {ECO:0000256|HAMAP-Rule:MF_00787};; Cobalt-precorrin-6A synthase {ECO:0000256|HAMAP-Rule:MF_00787}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Putative cobalt-precorrin-6A synthase [deacetylating] Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDU5_GEOUR
cobalamin biosynthesis protein CbiD
PLM4_65_coex_sep16_scaffold_5471_13
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8992..9180)
DNA (189bp) protein (63aa)
Cobalt-precorrin-8X methylmutase Tax=Geobacter sulfurreducens RepID=D7AE08_GEOSK
cbiC; cobalt-precorrin-8X methylmutase
Precorrin-8X methylmutase {ECO:0000313|EMBL:AJY69250.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
PLM4_65_coex_sep16_scaffold_5471_14
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9177..9581)
DNA (405bp) protein (135aa)
Precorrin-8X methylmutase {ECO:0000313|EMBL:ABQ24251.1}; EC=5.4.1.2 {ECO:0000313|EMBL:ABQ24251.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Precorrin-8X methylmutase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDU4_GEOUR
precorrin-8X methylmutase CbiC/CobH
PLM4_65_coex_sep16_scaffold_5471_15
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9581..9964)
DNA (384bp) protein (128aa)
Cobalamin (Vitamin B12) biosynthesis CbiX protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7U8_GEODF
cobalamin (vitamin B12) biosynthesis CbiX protein
Sirohydrochlorin cobaltochelatase {ECO:0000313|EMBL:ACM18406.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_5471_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9990..11315)
DNA (1326bp) protein (442aa)
Peptidase M16 domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDU2_GEOUR
peptidase M16 domain-containing protein
Peptidase M16 domain protein {ECO:0000313|EMBL:ABQ24249.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_5471_17
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11383..11952)
DNA (570bp) protein (190aa)
Membrane protein-like protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDU1_GEOUR
hypothetical protein
Membrane protein-like protein {ECO:0000313|EMBL:ABQ24248.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_5471_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12005..12775)
DNA (771bp) protein (257aa)
Nucleic acid binding, OB-fold, tRNA/helicase-type Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDU0_GEOUR
OB-fold tRNA/helicase-type nucleic acid binding protein
Nucleic acid binding, OB-fold, tRNA/helicase-type {ECO:0000313|EMBL:ABQ24247.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_5471_19
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13086..13247)
DNA (162bp) protein (54aa)
Heat shock protein Hsp20 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8D6_GEOUR
Small heat shock protein C2 {ECO:0000313|EMBL:GAM09821.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
molecular chaperone
PLM4_65_coex_sep16_scaffold_5471_20
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13189..13386)
DNA (198bp) protein (66aa)
ATP-independent chaperone, alpha-crystallin/Hsp20 family Tax=Geobacter metallireducens RepID=Q39RC3_GEOMG
molecular chaperone
ATP-independent chaperone, alpha-crystallin/Hsp20 family {ECO:0000313|EMBL:ABB33201.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
Displaying 20 items

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