ggKbase home page

PLM4_65_coex_sep16_scaffold_5346_1

Organism: PLM4_65_coex_sep16_Deltaproteobacteria_Geobacteraceae_55_13

near complete RP 48 / 55 MC: 5 BSCG 47 / 51 MC: 5 ASCG 13 / 38 MC: 5
Location: comp(44..1690)

Top 3 Functional Annotations

Value Algorithm Source
Nickel-dependent hydrogenase, large subunit Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LMH4_SYNFM similarity UNIREF
DB: UNIREF100
  • Identity: 52.6
  • Coverage: 551.0
  • Bit_score: 610
  • Evalue 8.60e-172
Periplasmic [NiFe] hydrogenase large subunit {ECO:0000313|EMBL:GAM09452.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 66.3
  • Coverage: 558.0
  • Bit_score: 716
  • Evalue 2.00e-203
nickel-dependent hydrogenase large subunit similarity KEGG
DB: KEGG
  • Identity: 52.6
  • Coverage: 551.0
  • Bit_score: 610
  • Evalue 2.40e-172

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Geobacter sp. OR-1 → Geobacter → Desulfuromonadales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1647
ATGGCAAGCAAAATAGTGATCGACCCGGTTACCCGCATCGAGGGTCACCTCCGGATGGAAACGGAGGTCACCGGTGGTTTTGTCAGCAATGCCTGGAGTACTGGGACCCTGTTCCGCGGTGTGGAGGTGATCCTGAAGAACCGCGACCCCCGCGACGCCTGGATGCTTACCCAGCGAATCTGCGGCGTCTGCACCTACGTCCACGGCGTTACCTCCATCCGAAGCGTGGAAAATGCGCTCGGCCTCACCGTTCCCGACAATGCCCGGACCGTCCGTAATCTCCTGATGGGGGCCCAGTACGTTCATGACCACATCATCCACTTCTATGCGCTTCATTTGCTCGACTGGGTGGACATCACCCGGGCCCTTGCTGCCGACCCCGCCACGGCGGTGACGATAGACAGGCAGATATGCTCAACCCGCACCCGTGACGCAGCTTACTTCACCGCCGTGAAGGATAAACTCGCGGGTTTCGTCGGCAGCGGGCAGCTCGGCCCGTTCGCCAATGGTTACTGGGGGCACGCCGGCTATAAGCTATCCCCGGAGATGAGCCTGGTCATGATGGCCAACTATCTGGAGGCCCTCCGTTTCCAGGTGCAGATCATCAAGATGCACGCCATCCTCGGCGGCAAGAATCCCCACCCCCAGAGCTTGCTCATCGGCGGCGTGACGCCGGACCTGGATTTCACCCTTGGACGGCTGACGGAATTTCAGAGCCTCTGCACCGAGGCGAAGTCCTTCGTCGATACCTATTACCTGCCCGATGCCACCGCCATCGCCGCTATCTACGGACAACCTGAGAACGGAGGATATGGCGCCATCGGCAGCTGCAATAACCTGCTCTGCTTCGGCGAGTTTCCCCAGACTGCCGACGAGCCGGCCAGCCTCTTCTTCCCCCGCGGCGCCATCTTCGGCAAGGCGACCGGTAATGTGCAGTCGGTGAACGTGGCCGACATCACCGAGCACGTGGCCCGGAGCTGGTATGAGGGGAGTACCCCCCATAACCCGGCCCAGGGGGATACGGTTCCGGTTTACTCGGGAATCGATCTCGATGAGAAATATAGTTGGCTCAAGGCCCCCCGTTATAACGGCCAGCCCATGGAGGTCGGACCACTTGCCCGCGTCATGGTTGCCTATGGCCAGGGCATGGGCGCCATGGTAGCGGCGGTCAACACTTTTCTCTCGGCGACCTTCCTGACGCTCCCCCAGATGTACTCCACCATCGGCCGCACCAGCGCGCGGGCCATCGAGACAAAGGTCATAGCCGACGCCATGGCCGACTGGATTGCCGAACTCATTGTTGTGAAGAACAACCCCCTTCGGGAAAGCTTCACCATGCAGGCTGCCGGCAGCGGCGTCGCCCTCAACGAGGCGCCGCGGGGCGCCCTGGGCCACTGGCTGAACTACTCCGACACCAAGATTGACAACTACCAGATGGTGGTCCCATCCACCTGGAACTTCGGTCCACGTGATGACGCCAATGTGGCCGGCCCGGTAGAGCAGGCGCTTATCGGTACCCCGGTTGCCAACGACCAGAAGCCGTTGGAGATTCTCCGGGTTATCCACTCATTTGATCCCTGCATTGCCTGCGCCGTGCACCTCGTAAACCTCACCGGCGACGAAGAGGTGAACATCAATGTTCTCTAG
PROTEIN sequence
Length: 549
MASKIVIDPVTRIEGHLRMETEVTGGFVSNAWSTGTLFRGVEVILKNRDPRDAWMLTQRICGVCTYVHGVTSIRSVENALGLTVPDNARTVRNLLMGAQYVHDHIIHFYALHLLDWVDITRALAADPATAVTIDRQICSTRTRDAAYFTAVKDKLAGFVGSGQLGPFANGYWGHAGYKLSPEMSLVMMANYLEALRFQVQIIKMHAILGGKNPHPQSLLIGGVTPDLDFTLGRLTEFQSLCTEAKSFVDTYYLPDATAIAAIYGQPENGGYGAIGSCNNLLCFGEFPQTADEPASLFFPRGAIFGKATGNVQSVNVADITEHVARSWYEGSTPHNPAQGDTVPVYSGIDLDEKYSWLKAPRYNGQPMEVGPLARVMVAYGQGMGAMVAAVNTFLSATFLTLPQMYSTIGRTSARAIETKVIADAMADWIAELIVVKNNPLRESFTMQAAGSGVALNEAPRGALGHWLNYSDTKIDNYQMVVPSTWNFGPRDDANVAGPVEQALIGTPVANDQKPLEILRVIHSFDPCIACAVHLVNLTGDEEVNINVL*