ggKbase home page

PLM4_65_coex_sep16_scaffold_2133

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2133_1
GWA1_OD1_59_11, Parcubacteria, Bacteria

Not on your lists


comp(157..408)
DNA (252bp) protein (84aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003649896
50S ribosomal protein L31 {ECO:0000313|EMBL:KKW47699.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_59_11.;"
50S ribosomal protein L31
PLM4_65_coex_sep16_scaffold_2133_2
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

696..1877
DNA (1182bp) protein (394aa)
id=5049653 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
PLM4_65_coex_sep16_scaffold_2133_3
unknown

Not on your lists

1934..2308
DNA (375bp) protein (125aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2133_4
unknown

Not on your lists

2434..3150
DNA (717bp) protein (239aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2133_16S_1
unknown

Not on your lists

3588..5215
DNA (1628bp)
16S ribosomal RNA (16S rRNA)
PLM4_65_coex_sep16_scaffold_2133_5
unknown

Not on your lists

comp(5232..5747)
DNA (516bp) protein (172aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2133_6
R_OD1_56_20, Parcubacteria, Bacteria

Not on your lists

5863..6399
DNA (537bp) protein (179aa)
Two component transcriptional regulator, winged helix family Tax=uncultured bacterium RepID=K2BDG0_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_56_20_curated
PLM4_65_coex_sep16_scaffold_2133_7
GWA1_OD1_59_11, Parcubacteria, Bacteria

Not on your lists


6476..6814
DNA (339bp) protein (113aa)
50S ribosomal protein L19 {ECO:0000313|EMBL:KKW47702.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_59_11.;"
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
rplS; 50S ribosomal protein L19
PLM4_65_coex_sep16_scaffold_2133_8
R_RIF_OD1_12_48_12, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

6875..8167
DNA (1293bp) protein (431aa)
Processing peptidase Tax=Thermoanaerobacterium xylanolyticum LX-11 RepID=F6BFH2_9FIRM bin=ACD1 species=Thermoanaerobacterium xylanolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
Zn-dependent peptidase
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_12_48_12_curated
PLM4_65_coex_sep16_scaffold_2133_9
GWB1_OD1_42_17, Azambacteria, Parcubacteria, Bacteria

Not on your lists

comp(8213..9451)
DNA (1239bp) protein (413aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS44092.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWB1_42_17.;"
Putative uncharacterized protein bin=GWC2_OD1_43_27 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
multidrug ABC transporter substrate-binding protein
PLM4_65_coex_sep16_scaffold_2133_10
R_OD1_45_15, Parcubacteria, Bacteria

Not on your lists

comp(9453..10175)
DNA (723bp) protein (241aa)
Macrolide export ATP-binding/permease protein MacB bin=GWC2_OD1_43_27 species=PER_GWA2_38_35 genus=PER_GWA2_38_35 taxon_order=PER_GWA2_38_35 taxon_class=PER_GWA2_38_35 phylum=PER tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
antimicrobial peptide ABC transporter ATPase
Tax=RIFCSPLOWO2_01_FULL_OD1_45_15_curated
PLM4_65_coex_sep16_scaffold_2133_11
R_OD1_45_15, Parcubacteria, Bacteria

Not on your lists

comp(10182..11651)
DNA (1470bp) protein (490aa)
Secretion protein HlyD family protein bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RND family efflux transporter MFP subunit
Tax=RIFCSPLOWO2_01_FULL_OD1_45_15_curated
PLM4_65_coex_sep16_scaffold_2133_12

Not on your lists

11744..12319
DNA (576bp) protein (192aa)
Transcriptional regulator, CarD family Tax=sediment metagenome RepID=D9PL55_9ZZZZ
Transcriptional regulator, CarD family {ECO:0000313|EMBL:EFK95711.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
CarD family transcriptional regulator
PLM4_65_coex_sep16_scaffold_2133_13
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

12443..12823
DNA (381bp) protein (127aa)
Putative uncharacterized protein bin=GWF2_Firmicute_51_9 species=Lachnospiraceae bacterium 6_1_37FAA genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
Tax=GWF2_Firmicutes_51_9_curated
PLM4_65_coex_sep16_scaffold_2133_14
CG_Kuenen_03, Kuenenbacteria, Parcubacteria, Bacteria

Not on your lists

12880..13197
DNA (318bp) protein (106aa)
Putative membrane protein Tax=uncultured bacterium RepID=K2GFS6_9BACT
hypothetical protein
Tax=CG_Kuenen_03
Displaying 15 items

View Taxonomy