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PLM4_65_coex_sep16_scaffold_5835

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_5835_1
GWA1_OD1_48_11, Jorgensenbacteria, Parcubacteria, Bacteria

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comp(1..1215)
DNA (1215bp) protein (405aa)
ttr:Tter_1009 leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] bin=ACD30 species=ACD30 genus=ACD30 taxon_order=ACD30 taxon_class=ACD30 phylum=OP11 tax=ACD30 organism_group=OP11 (Microgenomates) organism_desc=OP11
Leucine-tRNA ligase {ECO:0000313|EMBL:KKU91645.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWA1_48_11.;"
leucyl-tRNA synthetase
PLM4_65_coex_sep16_scaffold_5835_2
R_OD1_Wolfebacteria_42_16, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(1240..2064)
DNA (825bp) protein (275aa)
hydrolase, TatD family; K03424 TatD DNase family protein [EC:3.1.21.-] bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
yabD; metal-dependent DNase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Wolfebacteria_42_16_curated
PLM4_65_coex_sep16_scaffold_5835_3
R_OD1_Azambacteria_44_14, Azambacteria, Parcubacteria, Bacteria

Not on your lists


comp(2064..3470)
DNA (1407bp) protein (469aa)
Methionine--tRNA ligase bin=GWC2_OD1_43_27 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
methionyl-tRNA synthetase
Tax=RIFCSPLOWO2_02_FULL_OD1_Azambacteria_44_14_curated
PLM4_65_coex_sep16_scaffold_5835_4
R_OD1_52_25, Parcubacteria, Bacteria

Not on your lists

comp(3471..4331)
DNA (861bp) protein (287aa)
Putative uncharacterized protein bin=GWC1_OD1_38_17 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_52_25_curated
PLM4_65_coex_sep16_scaffold_5835_5
R_RIF_OD1_12_48_26, RIF-OD1-12, Parcubacteria, Bacteria

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comp(4492..5760)
DNA (1269bp) protein (423aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1YGK9_9BACT
peptidase M16 domain-containing protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_48_26_curated
PLM4_65_coex_sep16_scaffold_5835_6
R_OD1_57_28, Parcubacteria, Bacteria

Not on your lists

comp(5774..6862)
DNA (1089bp) protein (363aa)
putative endopeptidase (EC:3.4.-.-)
peptidase M23 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
Tax=RIFCSPHIGHO2_01_FULL_OD1_57_28_curated
PLM4_65_coex_sep16_scaffold_5835_7

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comp(7936..8805)
DNA (870bp) protein (290aa)
Tagatose-bisphosphate aldolase; K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13] bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
Tagatose-bisphosphate aldolase {ECO:0000313|EMBL:KKW17138.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_50_14.;"
Tagatose-bisphosphate aldolase
PLM4_65_coex_sep16_scaffold_5835_8
R_OD1_57_28, Parcubacteria, Bacteria

Not on your lists

comp(8802..9173)
DNA (372bp) protein (124aa)
carbohydrate kinase PfkB; K00852 ribokinase [EC:2.7.1.15] bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
putative Ribokinase (EC:2.7.1.15)
Tax=RIFCSPHIGHO2_01_FULL_OD1_57_28_curated
PLM4_65_coex_sep16_scaffold_5835_9
R_RIF_OD1_13_60_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(9112..9741)
DNA (630bp) protein (210aa)
putative Ribokinase (EC:2.7.1.15)
Sugar kinase, ribokinase family (Fragment) bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_13_60_25_curated
PLM4_65_coex_sep16_scaffold_5835_10
R_RIF_OD1_12_48_26, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(9738..10325)
DNA (588bp) protein (196aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K00615 transketolase [EC:2.2.1.1] bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
transketolase
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_48_26_curated
PLM4_65_coex_sep16_scaffold_5835_11
GWB1_OD1_49_6_curated, Parcubacteria, Bacteria

Not on your lists

comp(10276..10737)
DNA (462bp) protein (154aa)
Transketolase central region bin=GWA1_ZB2_49_26 species=ACD30 genus=ACD30 taxon_order=ACD30 taxon_class=ACD30 phylum=OP11 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Transketolase, central region
Tax=GWB1_OD1_49_6_curated
PLM4_65_coex_sep16_scaffold_5835_12
GWA1_OD1_59_11, Parcubacteria, Bacteria

Not on your lists

comp(10734..11057)
DNA (324bp) protein (108aa)
tktB; transketolase N-terminal domain protein (EC:2.2.1.1) bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
Transketolase domain protein {ECO:0000313|EMBL:KKW48389.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_59_11.;"
Transketolase protein
Displaying 12 items

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