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PLM4_65_coex_sep16_scaffold_1154

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_1154_1

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comp(51..260)
DNA (210bp) protein (70aa)
Ribosomal protein L31 Tax=mine drainage metagenome RepID=T1D416_9ZZZZ
Ribosomal protein L31 {ECO:0000313|EMBL:EQD76264.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rpmE; 50S ribosomal protein L31
PLM4_65_coex_sep16_scaffold_1154_2
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(701..1939)
DNA (1239bp) protein (413aa)
coproporphyrinogen III oxidase Tax=Xanthomonas sp. M97 RepID=UPI0003AA5A6B
radical SAM protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_1154_3
Shimwellia blattae, Shimwellia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1936..2538)
DNA (603bp) protein (201aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shimwellia.;" source="Shimwellia blattae (strain ATCC 29907 / DSM 4481 / JCM 1650 / NBRC; 105725 / CDC 9005-74) (Escherichia blattae).;"
Non-canonical purine NTP pyrophosphatase Tax=Shimwellia blattae (strain ATCC 29907 / DSM 4481 / JCM 1650 / NBRC 105725 / CDC 9005-74) RepID=I2B586_SHIBC
rdgB; non-canonical purine NTP pyrophosphatase
PLM4_65_coex_sep16_scaffold_1154_4
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2544..3272)
DNA (729bp) protein (243aa)
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000255|HAMAP-Rule:MF_00564}; Short=RNase PH {ECO:0000255|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000255|HAMAP-Rule:MF_00564};; tRNA nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_00564}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halophila (strain DSM 244 / SL1) (Ectothiorhodospira; halophila (strain DSM 244 / SL1)).;"
ribonuclease PH Tax=Methylohalobius crimeensis RepID=UPI0003B302D0
PLM4_65_coex_sep16_scaffold_1154_5

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comp(3269..4015)
DNA (747bp) protein (249aa)
Protein serine/threonine phosphatase (Fragment) Tax=uncultured microorganism RepID=F8UHG9_9ZZZZ
Protein serine/threonine phosphatase {ECO:0000313|EMBL:AEI30476.1}; Flags: Fragment;; species="unclassified sequences; environmental samples.;" source="uncultured microorganism.;"
serine/threonine protein phosphatase
PLM4_65_coex_sep16_scaffold_1154_6

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4084..4938
DNA (855bp) protein (285aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1B888_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD64668.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_1154_7
unknown

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5140..5916
DNA (777bp) protein (259aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1154_8
unknown

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6189..6521
DNA (333bp) protein (111aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1154_9
unknown

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comp(6592..6750)
DNA (159bp) protein (53aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1154_10
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7154..7513
DNA (360bp) protein (120aa)
Uncharacterized protein {ECO:0000313|EMBL:KEO86431.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
PLM4_65_coex_sep16_scaffold_1154_11

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7664..8284
DNA (621bp) protein (207aa)
Guanylate kinase {ECO:0000313|EMBL:EQD53077.1}; EC=2.7.4.8 {ECO:0000313|EMBL:EQD53077.1};; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
guanylate kinase Tax=Pseudomonas mendocina RepID=UPI00037E4F30
guanylate kinase
PLM4_65_coex_sep16_scaffold_1154_12

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8341..8619
DNA (279bp) protein (93aa)
RNA polymerase, omega subunit Tax=mine drainage metagenome RepID=T1AI95_9ZZZZ
RNA polymerase, omega subunit {ECO:0000313|EMBL:EQD60221.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rpoZ; DNA-directed RNA polymerase subunit omega
PLM4_65_coex_sep16_scaffold_1154_13
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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8714..10873
DNA (2160bp) protein (720aa)
GTP diphosphokinase (EC:2.7.6.5)
GTP diphosphokinase Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G241_9GAMM
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_1154_14
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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11078..11464
DNA (387bp) protein (129aa)
endoribonuclease Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036374E1
endoribonuclease L-PSP
L-PSP (MRNA) endoribonuclease {ECO:0000313|EMBL:CDI03211.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
PLM4_65_coex_sep16_scaffold_1154_15
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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11461..13548
DNA (2088bp) protein (696aa)
ATP-dependent DNA helicase RecG Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000364428C
ATP-dependent DNA helicase RecG
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_1154_16
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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13545..14483
DNA (939bp) protein (313aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00210629}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00272707};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
4-hydroxybenzoate polyprenyltransferase Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036F17CB
4-hydroxybenzoate polyprenyltransferase
PLM4_65_coex_sep16_scaffold_1154_17
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14471..15223)
DNA (753bp) protein (251aa)
Competence protein F Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A5W0_ALKEH
competence protein F
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_1154_18
Marinobacter nanhaiticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15321..16385
DNA (1065bp) protein (355aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter nanhaiticus D15-8W.;"
bioB; biotin synthase (EC:2.8.1.6)
Biotin synthase Tax=Marinobacter nanhaiticus D15-8W RepID=N6WP53_9ALTE
PLM4_65_coex_sep16_scaffold_1154_19
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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16349..17470
DNA (1122bp) protein (374aa)
8-amino-7-oxononanoate synthase Tax=Methylobacter marinus RepID=UPI0003776A09
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:AKH20688.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
8-amino-7-oxononanoate synthase
PLM4_65_coex_sep16_scaffold_1154_20
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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17505..18302
DNA (798bp) protein (266aa)
Pimelyl-[acyl-carrier protein] methyl ester esterase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CNB5_SIDLE
bioH protein
Tax=RBG_16_Gamma2_64_11_curated
PLM4_65_coex_sep16_scaffold_1154_21
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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18299..19189
DNA (891bp) protein (297aa)
Malonyl-[acyl-carrier protein] O-methyltransferase Tax=Methylovorus sp. (strain SIP3-4) RepID=C6X9J5_METSD
biotin biosynthesis protein BioC
Tax=BJP_S1_SUB10_Methylophilales_55_32
PLM4_65_coex_sep16_scaffold_1154_22
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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19186..19815
DNA (630bp) protein (210aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI0003699567
dethiobiotin synthetase
Tax=BJP_IG2102_Gammaproteobacteria_62_140
PLM4_65_coex_sep16_scaffold_1154_23
Marinomonas sp. MED121, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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20384..20587
DNA (204bp) protein (68aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas sp. MED121.;"
Cytochrome c oxidase subunit 2 Tax=Marinomonas sp. MED121 RepID=A3YEC1_9GAMM
Heme/copper-type cytochrome/quinol oxidase, subunit 2
Displaying 23 items

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